Non-Coding RNA Search

rova028_o15.y1

Sequence:


               
               ACGACCACGTCATCTACACCATCTACTCCACACTTGGGGCATTTTACATCCCCTTGACTT
TGATACTGATTCTCTATTACCGGATTTACCATGCAGCCAAGAGCCTGTACCAGAAAAGAG
GATCAAGCAGGCACTTAAGCAACAGAAGCACAGATAGCCAAAATTCATTCGCAAGTTGTA
AACTGACACAGACCTTCTGTGTGTCTGACTTCTCCACCTCAGACCCTACCACAGAATTTG
AAAAGATCCACACCTCCATCAGGATCCCTCCTTTTGACAATGACCTAGATCACCCAGGAG
AACGCCAGCAGATCTCTAGTACCAGGGAGCGCAAGGCAGCTCGCATCCTGGGGCTGATTT
TGGGTGCGTTCATCTTGTCCTGGCTGCCATTTTTCATCAAAGAGCTGATTGTAGGTCTGA
GCATCTACACCGTATCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGACCACGTCATCTACACCATCTACTCCACACTTGGGGCATTTTACATCCCCTTGACTT
TGATACTGATTCTCTATTACCGGATTTACCATGCAGCCAAGAGCCTGTACCAGAAAAGAG
GATCAAGCAGGCACTTAAGCAACAGAAGCACAGATAGCCAAAATTCATTCGCAAGTTGTA
AACTGACACAGACCTTCTGTGTGTCTGACTTCTCCACCTCAGACCCTACCACAGAATTTG
AAAAGATCCACACCTCCATCAGGATCCCTCCTTTTGACAATGACCTAGATCACCCAGGAG
AACGCCAGCAGATCTCTAGTACCAGGGAGCGCAAGGCAGCTCGCATCCTGGGGCTGATTT
TGGGTGCGTTCATCTTGTCCTGGCTGCCATTTTTCATCAAAGAGCTGATTGTAGGTCTGA
GCATCTACACCGTATCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50744734|ref|XP_429887.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50744734|ref|XP_429887.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-267, - strand, RNAz p=0.579264

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-267, - strand, RNAz p=0.579264

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-439, gnl|bosTau2|chr9 (35277103-35276665)
               

               
               1-439, gnl|Hg17|chr6 (87782301-87782739)
               

               
               1-439, gnl|Mm7|chr16 (64873083-64872633)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-439, gnl|bosTau2|chr9 (35277103-35276665)
               

               
               1-439, gnl|Hg17|chr6 (87782301-87782739)
               

               
               1-439, gnl|Mm7|chr16 (64873083-64872633)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	1-439, gnl\|bosTau2\|chr9 (35277103-35276665)
	1-439, gnl\|Hg17\|chr6 (87782301-87782739)
	1-439, gnl\|Mm7\|chr16 (64873083-64872633)