Non-Coding RNA Search

rova029_h16.y1

Sequence:


               
               TTTTCAAAGCTTCCTAAACTGGAAAGTTGAGTTCTTAAGTGGAGCCACTCCGCTGACCTC
CAGAATGGAGTTTATTGAACTTGGCCTTCAGACCAAGTTCCTAAGCACCAAATGAGATGA
GCATGAGAGGACCGAGAGCCACATGGATGCCACACTTCTAGGTAGTGCTGGAGTGTTGCC
AACCCCTCAGGCCCTGAAGGATCGAGGGGAAGCAGGAAGATTAAGAAAGCAGCCCAGGTG
AGAGAGGATTCATGGGGAGTGATTAAAGACCTTTAGTATATTTTAGTTTCTTAGTCATCG
TATAGATAGAGCCAGAGGAGCAGAAGAACTGGCCATCAGCTGTGACCAAAAATGTTTGTG
GAATGGAATATCAGGAAGGATGATTTGTACAGGCTGGTCCTTGAGCCATAATCAGGATGA
TTAAGAGCAAATGAGggagttcccgtcttggttcagtggttaatgactgtgactagcatc
catgaagacgtgggtttgatccctggc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCAAAGCTTCCTAAACTGGAAAGTTGAGTTCTTAAGTGGAGCCACTCCGCTGACCTC
CAGAATGGAGTTTATTGAACTTGGCCTTCAGACCAAGTTCCTAAGCACCAAATGAGATGA
GCATGAGAGGACCGAGAGCCACATGGATGCCACACTTCTAGGTAGTGCTGGAGTGTTGCC
AACCCCTCAGGCCCTGAAGGATCGAGGGGAAGCAGGAAGATTAAGAAAGCAGCCCAGGTG
AGAGAGGATTCATGGGGAGTGATTAAAGACCTTTAGTATATTTTAGTTTCTTAGTCATCG
TATAGATAGAGCCAGAGGAGCAGAAGAACTGGCCATCAGCTGTGACCAAAAATGTTTGTG
GAATGGAATATCAGGAAGGATGATTTGTACAGGCTGGTCCTTGAGCCATAATCAGGATGA
TTAAGAGCAAATGAGggagttcccgtcttggttcagtggttaatgactgtgactagcatc
catgaagacgtgggtttgatccctggc

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-400, gnl|bosTau2|chr15 (39642744-39643144)
               

               
               2-400, gnl|canFam2|chr18 (35526455-35526053)
               

               
               2-400, gnl|dasNov1|scaffold_284704 (16-446)
               

               
               2-400, gnl|echTel1|scaffold_317473 (211982-212433)
               

               
               2-400, gnl|hg17|chr11 (35462600-35463022)
               

               
               2-400, gnl|Hg17|chr11 (35463093-35462679)
               

               
               2-400, gnl|loxAfr1|scaffold_9808 (61668-61223)
               

               
               2-400, gnl|mm7|chr2 (102444570-102444176)
               

               
               2-400, gnl|Mm7|chr2 (102441970-102444519)
               

               
               2-400, gnl|monDom2|scaffold_33 (507640-508003)
               

               
               2-400, gnl|panTro1|chr9 (35890439-35890850)
               

               
               2-400, gnl|rheMac2|chr14 (36350384-36349960)
               

               
               2-400, gnl|rn3|chr3 (87707659-87707247)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-400, gnl|bosTau2|chr15 (39642744-39643144)
               

               
               2-400, gnl|canFam2|chr18 (35526455-35526053)
               

               
               2-400, gnl|dasNov1|scaffold_284704 (16-446)
               

               
               2-400, gnl|echTel1|scaffold_317473 (211982-212433)
               

               
               2-400, gnl|hg17|chr11 (35462600-35463022)
               

               
               2-400, gnl|Hg17|chr11 (35463093-35462679)
               

               
               2-400, gnl|loxAfr1|scaffold_9808 (61668-61223)
               

               
               2-400, gnl|mm7|chr2 (102444570-102444176)
               

               
               2-400, gnl|Mm7|chr2 (102441970-102444519)
               

               
               2-400, gnl|monDom2|scaffold_33 (507640-508003)
               

               
               2-400, gnl|panTro1|chr9 (35890439-35890850)
               

               
               2-400, gnl|rheMac2|chr14 (36350384-36349960)
               

               
               2-400, gnl|rn3|chr3 (87707659-87707247)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	2-400, gnl\|bosTau2\|chr15 (39642744-39643144)
	2-400, gnl\|canFam2\|chr18 (35526455-35526053)
	2-400, gnl\|dasNov1\|scaffold_284704 (16-446)
	2-400, gnl\|echTel1\|scaffold_317473 (211982-212433)
	2-400, gnl\|hg17\|chr11 (35462600-35463022)
	2-400, gnl\|Hg17\|chr11 (35463093-35462679)
	2-400, gnl\|loxAfr1\|scaffold_9808 (61668-61223)
	2-400, gnl\|mm7\|chr2 (102444570-102444176)
	2-400, gnl\|Mm7\|chr2 (102441970-102444519)
	2-400, gnl\|monDom2\|scaffold_33 (507640-508003)
	2-400, gnl\|panTro1\|chr9 (35890439-35890850)
	2-400, gnl\|rheMac2\|chr14 (36350384-36349960)
	2-400, gnl\|rn3\|chr3 (87707659-87707247)