Non-Coding RNA Search

rova037_c14.y1

Sequence:


               
               GGGTGATTGGCTTACTCGCCTCGCACACAACTGGGCTCCAGGAAAATACACCTGTCATGG
AGGCAATTACTCTCCTAACGGAATTAATTAGGGAAAACTTCAGGAACAGCAAATTAAAAC
AGTGCCTTTTACCCACCCTGGGGGAGCTGATCTACCTTGTAGCCACACAGGAAGAAAAAA
AAAAAGAACCCCCGAGAATGCTGGGCTGTTCCCTTGGCTGCGTACACGGTGCTAATGAGG
TGCCTTCGGGAAGGGGAAGAACGTGTTGTGAATCACATGGCAGCCAAGATTATTGAAAAT
GTCTGCACTACCTTTTCTGCTCAGGCTCAGGGCTTTATTACAGGAGAAATTGGGCCTGTT
TTATGGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTGATTGGCTTACTCGCCTCGCACACAACTGGGCTCCAGGAAAATACACCTGTCATGG
AGGCAATTACTCTCCTAACGGAATTAATTAGGGAAAACTTCAGGAACAGCAAATTAAAAC
AGTGCCTTTTACCCACCCTGGGGGAGCTGATCTACCTTGTAGCCACACAGGAAGAAAAAA
AAAAAGAACCCCCGAGAATGCTGGGCTGTTCCCTTGGCTGCGTACACGGTGCTAATGAGG
TGCCTTCGGGAAGGGGAAGAACGTGTTGTGAATCACATGGCAGCCAAGATTATTGAAAAT
GTCTGCACTACCTTTTCTGCTCAGGCTCAGGGCTTTATTACAGGAGAAATTGGGCCTGTT
TTATGGTAC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               61-175, gnl|bosTau2|chr22 (7128959-7128844)
               

               
               61-175, gnl|Hg17|chr3 (41852469-41852354)
               

               
               61-175, gnl|Mm7|chr9 (120906549-120906434)
               


               
               255-369, gnl|bosTau2|chr22 (7108869-7108755)
               

               
               255-369, gnl|canFam2|chr23 (14045136-14045343)
               

               
               255-369, gnl|danRer3|chr16 (2218942-2218742)
               

               
               255-369, gnl|echTel1|scaffold_287384 (43737-43953)
               

               
               255-369, gnl|galGal2|chr2 (42733961-42734171)
               

               
               255-369, gnl|hg17|chr3 (41816623-41816824)
               

               
               255-369, gnl|Hg17|chr3 (41816790-41816676)
               

               
               255-369, gnl|loxAfr1|scaffold_47825 (5231-5449)
               

               
               255-369, gnl|mm7|chr9 (120890917-120891149)
               

               
               255-369, gnl|Mm7|chr9 (120891083-120890969)
               

               
               255-369, gnl|monDom2|scaffold_7 (63995170-63994961)
               

               
               255-369, gnl|panTro1|chr2_random (35564245-35564040)
               

               
               255-369, gnl|rheMac2|chr2 (94776386-94776172)
               

               
               255-369, gnl|rn3|chr8 (126249086-126249320)
               

               
               255-369, gnl|xenTro1|scaffold_807 (291748-291950)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-175, gnl|bosTau2|chr22 (7128959-7128844)
               

               
               61-175, gnl|Hg17|chr3 (41852469-41852354)
               

               
               61-175, gnl|Mm7|chr9 (120906549-120906434)
               


               
               255-369, gnl|bosTau2|chr22 (7108869-7108755)
               

               
               255-369, gnl|canFam2|chr23 (14045136-14045343)
               

               
               255-369, gnl|danRer3|chr16 (2218942-2218742)
               

               
               255-369, gnl|echTel1|scaffold_287384 (43737-43953)
               

               
               255-369, gnl|galGal2|chr2 (42733961-42734171)
               

               
               255-369, gnl|hg17|chr3 (41816623-41816824)
               

               
               255-369, gnl|Hg17|chr3 (41816790-41816676)
               

               
               255-369, gnl|loxAfr1|scaffold_47825 (5231-5449)
               

               
               255-369, gnl|mm7|chr9 (120890917-120891149)
               

               
               255-369, gnl|Mm7|chr9 (120891083-120890969)
               

               
               255-369, gnl|monDom2|scaffold_7 (63995170-63994961)
               

               
               255-369, gnl|panTro1|chr2_random (35564245-35564040)
               

               
               255-369, gnl|rheMac2|chr2 (94776386-94776172)
               

               
               255-369, gnl|rn3|chr8 (126249086-126249320)
               

               
               255-369, gnl|xenTro1|scaffold_807 (291748-291950)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ova (0.129132)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	61-175, gnl\|bosTau2\|chr22 (7128959-7128844)
	61-175, gnl\|Hg17\|chr3 (41852469-41852354)
	61-175, gnl\|Mm7\|chr9 (120906549-120906434)

	255-369, gnl\|bosTau2\|chr22 (7108869-7108755)
	255-369, gnl\|canFam2\|chr23 (14045136-14045343)
	255-369, gnl\|danRer3\|chr16 (2218942-2218742)
	255-369, gnl\|echTel1\|scaffold_287384 (43737-43953)
	255-369, gnl\|galGal2\|chr2 (42733961-42734171)
	255-369, gnl\|hg17\|chr3 (41816623-41816824)
	255-369, gnl\|Hg17\|chr3 (41816790-41816676)
	255-369, gnl\|loxAfr1\|scaffold_47825 (5231-5449)
	255-369, gnl\|mm7\|chr9 (120890917-120891149)
	255-369, gnl\|Mm7\|chr9 (120891083-120890969)
	255-369, gnl\|monDom2\|scaffold_7 (63995170-63994961)
	255-369, gnl\|panTro1\|chr2_random (35564245-35564040)
	255-369, gnl\|rheMac2\|chr2 (94776386-94776172)
	255-369, gnl\|rn3\|chr8 (126249086-126249320)
	255-369, gnl\|xenTro1\|scaffold_807 (291748-291950)