Non-Coding RNA Search

rova037_d21.y1

Sequence:


               
               GGAGGTTCCTGATGCGCCCAGCAGAGCTGAAAGGGCACAGTCCGTCTGCCGATGCCTATA
AGATCACAGAGATGCTTTCCAGCCAGGGCAGGCTGTGCTGATGTGACGGATGCTCTCCAG
ACCGTCAGTGGGATGGTTCTCATGGTGATGAGATGCGAATGTTGCCGGGGTCATGAGAAT
CTTGAATTTCTCCGACTCGCCTCTACTCCTAGCAGCTTTACCCGGAGCGAGGTATCACGG
CCTCAGCTTCCATTTTTAACCTTCAGCTGCATGAGATTTCAAATCTATGAGCTGCACATG
ATGAAATTTAGAGGCTGGCTTCTCCTCCATCTGTAATCATCTTCCCATTGCTTTCCCAGC
TTTTTACTTTTCACTTATGTAATGCTAGTTTTCATTCTGTCATTGAGCTGTATGCACTAA
AAAGCTGGTTCTCTCTTTTTTGCCATCACATGTATCTCTCTGTAAGACATGTCTCATGTG
AGAAAAATGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTTCCTGATGCGCCCAGCAGAGCTGAAAGGGCACAGTCCGTCTGCCGATGCCTATA
AGATCACAGAGATGCTTTCCAGCCAGGGCAGGCTGTGCTGATGTGACGGATGCTCTCCAG
ACCGTCAGTGGGATGGTTCTCATGGTGATGAGATGCGAATGTTGCCGGGGTCATGAGAAT
CTTGAATTTCTCCGACTCGCCTCTACTCCTAGCAGCTTTACCCGGAGCGAGGTATCACGG
CCTCAGCTTCCATTTTTAACCTTCAGCTGCATGAGATTTCAAATCTATGAGCTGCACATG
ATGAAATTTAGAGGCTGGCTTCTCCTCCATCTGTAATCATCTTCCCATTGCTTTCCCAGC
TTTTTACTTTTCACTTATGTAATGCTAGTTTTCATTCTGTCATTGAGCTGTATGCACTAA
AAAGCTGGTTCTCTCTTTTTTGCCATCACATGTATCTCTCTGTAAGACATGTCTCATGTG
AGAAAAATGATCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               14-126, - strand, RNAz p=0.531395
               

               
               340-439, + strand, RNAz p=0.908313

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-126, - strand, RNAz p=0.531395
               

               
               340-439, + strand, RNAz p=0.908313

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-487, gnl|bosTau2|chr5 (3554871-3554395)
               

               
               1-487, gnl|canFam2|chr15 (23235091-23235580)
               

               
               1-487, gnl|echTel1|scaffold_299345 (118054-117557)
               

               
               1-487, gnl|hg17|chr12 (76329056-76329543)
               

               
               1-487, gnl|Hg17|chr12 (76329157-76329640)
               

               
               1-487, gnl|loxAfr1|scaffold_37529 (42780-42291)
               

               
               1-487, gnl|mm7|chr10 (109798331-109797857)
               

               
               1-487, gnl|Mm7|chr10 (109798233-109797238)
               

               
               1-487, gnl|monDom2|scaffold_36 (10245249-10245715)
               

               
               1-487, gnl|oryCun1|scaffold_205518 (76811-76324)
               

               
               1-487, gnl|panTro1|chr10 (77869724-77870211)
               

               
               1-487, gnl|rheMac2|chr11 (74422016-74422505)
               

               
               1-487, gnl|rn3|chr7 (49222548-49222075)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-487, gnl|bosTau2|chr5 (3554871-3554395)
               

               
               1-487, gnl|canFam2|chr15 (23235091-23235580)
               

               
               1-487, gnl|echTel1|scaffold_299345 (118054-117557)
               

               
               1-487, gnl|hg17|chr12 (76329056-76329543)
               

               
               1-487, gnl|Hg17|chr12 (76329157-76329640)
               

               
               1-487, gnl|loxAfr1|scaffold_37529 (42780-42291)
               

               
               1-487, gnl|mm7|chr10 (109798331-109797857)
               

               
               1-487, gnl|Mm7|chr10 (109798233-109797238)
               

               
               1-487, gnl|monDom2|scaffold_36 (10245249-10245715)
               

               
               1-487, gnl|oryCun1|scaffold_205518 (76811-76324)
               

               
               1-487, gnl|panTro1|chr10 (77869724-77870211)
               

               
               1-487, gnl|rheMac2|chr11 (74422016-74422505)
               

               
               1-487, gnl|rn3|chr7 (49222548-49222075)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	14-126, - strand, RNAz p=0.531395
	340-439, + strand, RNAz p=0.908313

	1-487, gnl\|bosTau2\|chr5 (3554871-3554395)
	1-487, gnl\|canFam2\|chr15 (23235091-23235580)
	1-487, gnl\|echTel1\|scaffold_299345 (118054-117557)
	1-487, gnl\|hg17\|chr12 (76329056-76329543)
	1-487, gnl\|Hg17\|chr12 (76329157-76329640)
	1-487, gnl\|loxAfr1\|scaffold_37529 (42780-42291)
	1-487, gnl\|mm7\|chr10 (109798331-109797857)
	1-487, gnl\|Mm7\|chr10 (109798233-109797238)
	1-487, gnl\|monDom2\|scaffold_36 (10245249-10245715)
	1-487, gnl\|oryCun1\|scaffold_205518 (76811-76324)
	1-487, gnl\|panTro1\|chr10 (77869724-77870211)
	1-487, gnl\|rheMac2\|chr11 (74422016-74422505)
	1-487, gnl\|rn3\|chr7 (49222548-49222075)