Non-Coding RNA Search

rova039_h13.y1

Sequence:


               
               GAGGGTAGAGTCCTGGCACAGTGACTGGCAGAAGAATAAGCATTCAATTGATGTGAGTCA
TTGTTATTTTAAAGATAACCCCTTCTGGTAACATTCGAGACTCTCAATATTCAAGTTTAA
ACTGAGTGAAGCTGGATTTTGAATTCTTTCAAGCTGTTTCTTTTTCACAGGCAGGAAAAA
AAAAAACAACATTGCCACATCTGGGAAGGCCAAATGATAAATTAGTATCTTATTTATTAA
CAAAAGGGTAAGGAAAAAGTAGAAGTGGAGTGAAAAAGCAAGTTCTAAAATATATAAACC
CCCTTTTAAAAAATGTATATAGggagttcccgtcgtggcgcagtggttaaccaatctgac
taggaaccatgaggttgtgcgttcaatccctgcccttgctcagtgggttaacgatccggc
gttgccgtgagctgtggtgtaggtcgcagacacagctcagatcccgagttgctgtggctc
tggcctaggttggcagctgtagctctgattagacccctagcctgggaagctccatatgcc
tcgggagcagcccaagaaatgtcaaaaagaccaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTAGAGTCCTGGCACAGTGACTGGCAGAAGAATAAGCATTCAATTGATGTGAGTCA
TTGTTATTTTAAAGATAACCCCTTCTGGTAACATTCGAGACTCTCAATATTCAAGTTTAA
ACTGAGTGAAGCTGGATTTTGAATTCTTTCAAGCTGTTTCTTTTTCACAGGCAGGAAAAA
AAAAAACAACATTGCCACATCTGGGAAGGCCAAATGATAAATTAGTATCTTATTTATTAA
CAAAAGGGTAAGGAAAAAGTAGAAGTGGAGTGAAAAAGCAAGTTCTAAAATATATAAACC
CCCTTTTAAAAAATGTATATAGggagttcccgtcgtggcgcagtggttaaccaatctgac
taggaaccatgaggttgtgcgttcaatccctgcccttgctcagtgggttaacgatccggc
gttgccgtgagctgtggtgtaggtcgcagacacagctcagatcccgagttgctgtggctc
tggcctaggttggcagctgtagctctgattagacccctagcctgggaagctccatatgcc
tcgggagcagcccaagaaatgtcaaaaagaccaaaaa

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               43-321, gnl|bosTau2|chr13 (21573294-21573579)
               

               
               43-321, gnl|canFam2|chr2 (8891761-8891508)
               

               
               43-321, gnl|dasNov1|scaffold_127957 (953-1172)
               

               
               43-321, gnl|hg17|chr10 (28013429-28013720)
               

               
               43-321, gnl|Hg17|chr10 (28014113-28013445)
               

               
               43-321, gnl|oryCun1|scaffold_193265 (60114-60373)
               

               
               43-321, gnl|panTro1|chr8 (28347764-28348055)
               

               
               43-321, gnl|rheMac2|chr9 (27705305-27705590)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-321, gnl|bosTau2|chr13 (21573294-21573579)
               

               
               43-321, gnl|canFam2|chr2 (8891761-8891508)
               

               
               43-321, gnl|dasNov1|scaffold_127957 (953-1172)
               

               
               43-321, gnl|hg17|chr10 (28013429-28013720)
               

               
               43-321, gnl|Hg17|chr10 (28014113-28013445)
               

               
               43-321, gnl|oryCun1|scaffold_193265 (60114-60373)
               

               
               43-321, gnl|panTro1|chr8 (28347764-28348055)
               

               
               43-321, gnl|rheMac2|chr9 (27705305-27705590)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	43-321, gnl\|bosTau2\|chr13 (21573294-21573579)
	43-321, gnl\|canFam2\|chr2 (8891761-8891508)
	43-321, gnl\|dasNov1\|scaffold_127957 (953-1172)
	43-321, gnl\|hg17\|chr10 (28013429-28013720)
	43-321, gnl\|Hg17\|chr10 (28014113-28013445)
	43-321, gnl\|oryCun1\|scaffold_193265 (60114-60373)
	43-321, gnl\|panTro1\|chr8 (28347764-28348055)
	43-321, gnl\|rheMac2\|chr9 (27705305-27705590)