rpan002_g3.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCGTTGTGCGCAAGTGGAGTGGAGAGAAGATGTCTTACTTGAAGAACTGGGGAGAAGG CTGGGGTTTCATGCCCTCTGATAGAGCCCTTGTCTTTGTTGATAACCATGACAACCAGCG AGGGCATGGAGCAGGGGGAGCATCTATTCTTACATTCTGGGACGCTAGACTGTACAAAGT GGCAGTTGGATTTATGCTCGCCCACCCTTACGGATTCACACGAGTGATGTCAAGCTACCG TTGGGCAAGAAATTTTGTGAATGGACAAGATGTTAATGATTGGATTGGGCCACCAAATAA TAACGGGGTCATTAAGGAAGTTACTATTAATGCAGATACTACCTGTGGCAATGACTGGGT CTGTGAGCATCGATGGCGTCAGATAAGGAACATGGTTTGGTTCCGTAACGTGGTGGACGG CCAACCTTTTGCAAACTGGTGGGATAACGGAAGCAACCAGGTAGCTTTTGGAAGAGGAAA CAGAGGATTCATTGTCTTTAACAATGATGATTGGCAATTATCTTCAACTTTGCAAACTGG TCTTCCTGGTGGCACATACTGTGATGTTATCTCTGGAGATAAAGTTGGTAGCAGTTGTAC AGGAATTAAAGTCTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCGTTGTGCGCAAGTGGAGTGGAGAGAAGATGTCTTACTTGAAGAACTGGGGAGAAGG CTGGGGTTTCATGCCCTCTGATAGAGCCCTTGTCTTTGTTGATAACCATGACAACCAGCG AGGGCATGGAGCAGGGGGAGCATCTATTCTTACATTCTGGGACGCTAGACTGTACAAAGT GGCAGTTGGATTTATGCTCGCCCACCCTTACGGATTCACACGAGTGATGTCAAGCTACCG TTGGGCAAGAAATTTTGTGAATGGACAAGATGTTAATGATTGGATTGGGCCACCAAATAA TAACGGGGTCATTAAGGAAGTTACTATTAATGCAGATACTACCTGTGGCAATGACTGGGT CTGTGAGCATCGATGGCGTCAGATAAGGAACATGGTTTGGTTCCGTAACGTGGTGGACGG CCAACCTTTTGCAAACTGGTGGGATAACGGAAGCAACCAGGTAGCTTTTGGAAGAGGAAA CAGAGGATTCATTGTCTTTAACAATGATGATTGGCAATTATCTTCAACTTTGCAAACTGG TCTTCCTGGTGGCACATACTGTGATGTTATCTCTGGAGATAAAGTTGGTAGCAGTTGTAC AGGAATTAAAGTCTATG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 126 entry(ies) | More info |
| Aligned organism(s): 126 entry(ies) | Help | Less info |
| 46-168, gnl|bosTau2|chr3 (33873659-33873537) | |
| 46-168, gnl|canFam2|chrUn (74466575-74466900) | |
| 46-168, gnl|canFam2|chrUn (46716405-46716730) | |
| 46-168, gnl|canFam2|chrUn (46716405-46716730) | |
| 46-168, gnl|canFam2|chrUn (46701686-46701549) | |
| 46-168, gnl|danRer3|chr17 (47519236-47518925) | |
| 46-168, gnl|danRer3|chr2 (6835965-6835651) | |
| 46-168, gnl|danRer3|chr2 (6835965-6835651) | |
| 46-168, gnl|danRer3|chrNA (42284779-42284916) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3608-3739) | |
| 46-168, gnl|fr1|chrUn (224058615-224058388) | |
| 46-168, gnl|fr1|chrUn (224064486-224064259) | |
| 46-168, gnl|fr1|chrUn (224058615-224058388) | |
| 46-168, gnl|fr1|chrUn (224066106-224066227) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23824-23960) | |
| 46-168, gnl|hg17|chr1 (104009140-104009466) | |
| 46-168, gnl|hg17|chr1 (103876219-103876545) | |
| 46-168, gnl|hg17|chr1 (103915002-103915328) | |
| 46-168, gnl|hg17|chr1 (103946120-103946257) | |
| 46-168, gnl|Hg17|chr1 (104009142-104009264) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5215-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5219-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5215-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5350-5214) | |
| 46-168, gnl|mm7|chr3 (112969489-112969164) | |
| 46-168, gnl|mm7|chr3 (113136709-113136385) | |
| 46-168, gnl|mm7|chr3 (113104105-113103781) | |
| 46-168, gnl|mm7|chr3 (112969355-112969489) | |
| 46-168, gnl|Mm7|chr3 (113071490-113071368) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531612) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531616) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531612) | |
| 46-168, gnl|monDom2|scaffold_0 (14531806-14531943) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2018-2332) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2155-2018) | |
| 46-168, gnl|panTro1|chr1 (103084751-103085079) | |
| 46-168, gnl|panTro1|chr1 (103045427-103045753) | |
| 46-168, gnl|panTro1|chr1 (103084752-103085079) | |
| 46-168, gnl|panTro1|chr1 (103084888-103084751) | |
| 46-168, gnl|rheMac2|chr1 (106551552-106551879) | |
| 46-168, gnl|rheMac2|chr1 (106593814-106594141) | |
| 46-168, gnl|rheMac2|chr1 (106551553-106551879) | |
| 46-168, gnl|rheMac2|chr1 (106593950-106593813) | |
| 46-168, gnl|rn3|chr2 (209291913-209291597) | |
| 46-168, gnl|rn3|chr2 (209476286-209475962) | |
| 46-168, gnl|rn3|chr2 (209435660-209435336) | |
| 46-168, gnl|rn3|chr2 (209516005-209516142) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113465-2113344) | |
| 46-168, gnl|xenTro1|scaffold_466 (410412-410851) | |
| 46-168, gnl|xenTro1|scaffold_466 (410413-410851) | |
| 46-168, gnl|xenTro1|scaffold_466 (399841-400301) | |
| 46-168, gnl|xenTro1|scaffold_466 (400014-399841) | |
| 386-520, gnl|bosTau2|chr3 (33870566-33870432) | |
| 386-520, gnl|canFam2|chr6 (50009331-50009488) | |
| 386-520, gnl|canFam2|chrUn (46718484-46718664) | |
| 386-520, gnl|canFam2|chrUn (46718508-46718664) | |
| 386-520, gnl|canFam2|chrUn (46718508-46718648) | |
| 386-520, gnl|danRer3|chr17 (47514817-47514674) | |
| 386-520, gnl|danRer3|chr2 (6833521-6833328) | |
| 386-520, gnl|danRer3|chr2 (6833487-6833328) | |
| 386-520, gnl|danRer3|chrNA (42282986-42283134) | |
| 386-520, gnl|dasNov1|scaffold_185385 (168-348) | |
| 386-520, gnl|dasNov1|scaffold_185385 (332-175) | |
| 386-520, gnl|dasNov1|scaffold_185385 (192-348) | |
| 386-520, gnl|dasNov1|scaffold_185385 (192-332) | |
| 386-520, gnl|echTel1|scaffold_38029 (1524-1339) | |
| 386-520, gnl|echTel1|scaffold_38029 (1355-1514) | |
| 386-520, gnl|echTel1|scaffold_38029 (1498-1339) | |
| 386-520, gnl|echTel1|scaffold_38029 (1498-1355) | |
| 386-520, gnl|fr1|chrUn (224058123-224057954) | |
| 386-520, gnl|fr1|chrUn (224065604-224065756) | |
| 386-520, gnl|fr1|chrUn (224058107-224057954) | |
| 386-520, gnl|fr1|chrUn (224063979-224063840) | |
| 386-520, gnl|galGal2|chr8 (23272-23114) | |
| 386-520, gnl|galGal2|chr8 (23114-23261) | |
| 386-520, gnl|galGal2|chr8 (23253-23114) | |
| 386-520, gnl|galGal2|chr8 (23254-23114) | |
| 386-520, gnl|hg17|chr1 (103917493-103917677) | |
| 386-520, gnl|hg17|chr1 (103943596-103943753) | |
| 386-520, gnl|hg17|chr1 (104011659-104011815) | |
| 386-520, gnl|hg17|chr1 (103878731-103878871) | |
| 386-520, gnl|Hg17|chr1 (104011665-104011799) | |
| 386-520, gnl|mm7|chr3 (113102435-113102251) | |
| 386-520, gnl|mm7|chr3 (112967558-112967716) | |
| 386-520, gnl|mm7|chr3 (112967699-112967542) | |
| 386-520, gnl|mm7|chr3 (113135012-113134872) | |
| 386-520, gnl|Mm7|chr3 (113069787-113069653) | |
| 386-520, gnl|monDom2|scaffold_0 (14528561-14528347) | |
| 386-520, gnl|monDom2|scaffold_0 (14528363-14528517) | |
| 386-520, gnl|monDom2|scaffold_0 (14528503-14528347) | |
| 386-520, gnl|monDom2|scaffold_0 (14528503-14528363) | |
| 386-520, gnl|oryCun1|scaffold_67902 (643-831) | |
| 386-520, gnl|oryCun1|scaffold_67902 (815-654) | |
| 386-520, gnl|oryCun1|scaffold_67902 (671-831) | |
| 386-520, gnl|oryCun1|scaffold_67902 (675-815) | |
| 386-520, gnl|panTro1|chr1 (103087245-103087429) | |
| 386-520, gnl|panTro1|chr1 (103087413-103087256) | |
| 386-520, gnl|panTro1|chr1 (103087273-103087429) | |
| 386-520, gnl|panTro1|chr1 (103047936-103048076) | |
| 386-520, gnl|rheMac2|chr1 (106554387-106554570) | |
| 386-520, gnl|rheMac2|chr1 (106596465-106596309) | |
| 386-520, gnl|rheMac2|chr1 (106554414-106554570) | |
| 386-520, gnl|rheMac2|chr1 (106596325-106596465) | |
| 386-520, gnl|rn3|chr2 (209434013-209433829) | |
| 386-520, gnl|rn3|chr2 (209513417-209513574) | |
| 386-520, gnl|rn3|chr2 (209290134-209289980) | |
| 386-520, gnl|rn3|chr2 (209474616-209474476) | |
| 386-520, gnl|tetNig1|chr15_random (2113830-2114000) | |
| 386-520, gnl|tetNig1|chr15_random (2113985-2113831) | |
| 386-520, gnl|tetNig1|chr15_random (2113847-2114000) | |
| 386-520, gnl|tetNig1|chr15_random (2113846-2113985) | |
| 386-520, gnl|xenTro1|scaffold_466 (401141-401305) | |
| 386-520, gnl|xenTro1|scaffold_466 (401305-401152) | |
| 386-520, gnl|xenTro1|scaffold_466 (411530-411669) | |
| 386-520, gnl|xenTro1|scaffold_466 (411530-411669) |
| Aligned organism(s): 126 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-168, gnl|bosTau2|chr3 (33873659-33873537) | |
| 46-168, gnl|canFam2|chrUn (74466575-74466900) | |
| 46-168, gnl|canFam2|chrUn (46716405-46716730) | |
| 46-168, gnl|canFam2|chrUn (46716405-46716730) | |
| 46-168, gnl|canFam2|chrUn (46701686-46701549) | |
| 46-168, gnl|danRer3|chr17 (47519236-47518925) | |
| 46-168, gnl|danRer3|chr2 (6835965-6835651) | |
| 46-168, gnl|danRer3|chr2 (6835965-6835651) | |
| 46-168, gnl|danRer3|chrNA (42284779-42284916) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3739-3419) | |
| 46-168, gnl|echTel1|scaffold_38029 (3608-3739) | |
| 46-168, gnl|fr1|chrUn (224058615-224058388) | |
| 46-168, gnl|fr1|chrUn (224064486-224064259) | |
| 46-168, gnl|fr1|chrUn (224058615-224058388) | |
| 46-168, gnl|fr1|chrUn (224066106-224066227) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23960-23618) | |
| 46-168, gnl|galGal2|chr8 (23824-23960) | |
| 46-168, gnl|hg17|chr1 (104009140-104009466) | |
| 46-168, gnl|hg17|chr1 (103876219-103876545) | |
| 46-168, gnl|hg17|chr1 (103915002-103915328) | |
| 46-168, gnl|hg17|chr1 (103946120-103946257) | |
| 46-168, gnl|Hg17|chr1 (104009142-104009264) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5215-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5219-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5215-5539) | |
| 46-168, gnl|loxAfr1|scaffold_100313 (5350-5214) | |
| 46-168, gnl|mm7|chr3 (112969489-112969164) | |
| 46-168, gnl|mm7|chr3 (113136709-113136385) | |
| 46-168, gnl|mm7|chr3 (113104105-113103781) | |
| 46-168, gnl|mm7|chr3 (112969355-112969489) | |
| 46-168, gnl|Mm7|chr3 (113071490-113071368) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531612) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531616) | |
| 46-168, gnl|monDom2|scaffold_0 (14531942-14531612) | |
| 46-168, gnl|monDom2|scaffold_0 (14531806-14531943) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2018-2332) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2019-2333) | |
| 46-168, gnl|oryCun1|scaffold_53786 (2155-2018) | |
| 46-168, gnl|panTro1|chr1 (103084751-103085079) | |
| 46-168, gnl|panTro1|chr1 (103045427-103045753) | |
| 46-168, gnl|panTro1|chr1 (103084752-103085079) | |
| 46-168, gnl|panTro1|chr1 (103084888-103084751) | |
| 46-168, gnl|rheMac2|chr1 (106551552-106551879) | |
| 46-168, gnl|rheMac2|chr1 (106593814-106594141) | |
| 46-168, gnl|rheMac2|chr1 (106551553-106551879) | |
| 46-168, gnl|rheMac2|chr1 (106593950-106593813) | |
| 46-168, gnl|rn3|chr2 (209291913-209291597) | |
| 46-168, gnl|rn3|chr2 (209476286-209475962) | |
| 46-168, gnl|rn3|chr2 (209435660-209435336) | |
| 46-168, gnl|rn3|chr2 (209516005-209516142) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113344-2113571) | |
| 46-168, gnl|tetNig1|chr15_random (2113465-2113344) | |
| 46-168, gnl|xenTro1|scaffold_466 (410412-410851) | |
| 46-168, gnl|xenTro1|scaffold_466 (410413-410851) | |
| 46-168, gnl|xenTro1|scaffold_466 (399841-400301) | |
| 46-168, gnl|xenTro1|scaffold_466 (400014-399841) | |
| 386-520, gnl|bosTau2|chr3 (33870566-33870432) | |
| 386-520, gnl|canFam2|chr6 (50009331-50009488) | |
| 386-520, gnl|canFam2|chrUn (46718484-46718664) | |
| 386-520, gnl|canFam2|chrUn (46718508-46718664) | |
| 386-520, gnl|canFam2|chrUn (46718508-46718648) | |
| 386-520, gnl|danRer3|chr17 (47514817-47514674) | |
| 386-520, gnl|danRer3|chr2 (6833521-6833328) | |
| 386-520, gnl|danRer3|chr2 (6833487-6833328) | |
| 386-520, gnl|danRer3|chrNA (42282986-42283134) | |
| 386-520, gnl|dasNov1|scaffold_185385 (168-348) | |
| 386-520, gnl|dasNov1|scaffold_185385 (332-175) | |
| 386-520, gnl|dasNov1|scaffold_185385 (192-348) | |
| 386-520, gnl|dasNov1|scaffold_185385 (192-332) | |
| 386-520, gnl|echTel1|scaffold_38029 (1524-1339) | |
| 386-520, gnl|echTel1|scaffold_38029 (1355-1514) | |
| 386-520, gnl|echTel1|scaffold_38029 (1498-1339) | |
| 386-520, gnl|echTel1|scaffold_38029 (1498-1355) | |
| 386-520, gnl|fr1|chrUn (224058123-224057954) | |
| 386-520, gnl|fr1|chrUn (224065604-224065756) | |
| 386-520, gnl|fr1|chrUn (224058107-224057954) | |
| 386-520, gnl|fr1|chrUn (224063979-224063840) | |
| 386-520, gnl|galGal2|chr8 (23272-23114) | |
| 386-520, gnl|galGal2|chr8 (23114-23261) | |
| 386-520, gnl|galGal2|chr8 (23253-23114) | |
| 386-520, gnl|galGal2|chr8 (23254-23114) | |
| 386-520, gnl|hg17|chr1 (103917493-103917677) | |
| 386-520, gnl|hg17|chr1 (103943596-103943753) | |
| 386-520, gnl|hg17|chr1 (104011659-104011815) | |
| 386-520, gnl|hg17|chr1 (103878731-103878871) | |
| 386-520, gnl|Hg17|chr1 (104011665-104011799) | |
| 386-520, gnl|mm7|chr3 (113102435-113102251) | |
| 386-520, gnl|mm7|chr3 (112967558-112967716) | |
| 386-520, gnl|mm7|chr3 (112967699-112967542) | |
| 386-520, gnl|mm7|chr3 (113135012-113134872) | |
| 386-520, gnl|Mm7|chr3 (113069787-113069653) | |
| 386-520, gnl|monDom2|scaffold_0 (14528561-14528347) | |
| 386-520, gnl|monDom2|scaffold_0 (14528363-14528517) | |
| 386-520, gnl|monDom2|scaffold_0 (14528503-14528347) | |
| 386-520, gnl|monDom2|scaffold_0 (14528503-14528363) | |
| 386-520, gnl|oryCun1|scaffold_67902 (643-831) | |
| 386-520, gnl|oryCun1|scaffold_67902 (815-654) | |
| 386-520, gnl|oryCun1|scaffold_67902 (671-831) | |
| 386-520, gnl|oryCun1|scaffold_67902 (675-815) | |
| 386-520, gnl|panTro1|chr1 (103087245-103087429) | |
| 386-520, gnl|panTro1|chr1 (103087413-103087256) | |
| 386-520, gnl|panTro1|chr1 (103087273-103087429) | |
| 386-520, gnl|panTro1|chr1 (103047936-103048076) | |
| 386-520, gnl|rheMac2|chr1 (106554387-106554570) | |
| 386-520, gnl|rheMac2|chr1 (106596465-106596309) | |
| 386-520, gnl|rheMac2|chr1 (106554414-106554570) | |
| 386-520, gnl|rheMac2|chr1 (106596325-106596465) | |
| 386-520, gnl|rn3|chr2 (209434013-209433829) | |
| 386-520, gnl|rn3|chr2 (209513417-209513574) | |
| 386-520, gnl|rn3|chr2 (209290134-209289980) | |
| 386-520, gnl|rn3|chr2 (209474616-209474476) | |
| 386-520, gnl|tetNig1|chr15_random (2113830-2114000) | |
| 386-520, gnl|tetNig1|chr15_random (2113985-2113831) | |
| 386-520, gnl|tetNig1|chr15_random (2113847-2114000) | |
| 386-520, gnl|tetNig1|chr15_random (2113846-2113985) | |
| 386-520, gnl|xenTro1|scaffold_466 (401141-401305) | |
| 386-520, gnl|xenTro1|scaffold_466 (401305-401152) | |
| 386-520, gnl|xenTro1|scaffold_466 (411530-411669) | |
| 386-520, gnl|xenTro1|scaffold_466 (411530-411669) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) |