Non-Coding RNA Search

rpan030_k7.y1

Sequence:


               
               GTCAGCTGCGATGCTCCTTGGAGGCTGGCTCCTACTGGCCTTCAATGCAATTCTCCTCCT
GTCCTGGGCCCTGGCCCCAAAGAGACTGTGCCCAAGGAGGGGCAGTGGCCCAATGCTGGG
GGTGCAAGCAGCAGCAGCCATTGCCACCATTGTGGGCCTGCTGGTTTTCCCCATCAGCTT
GGCCTCCCCATTCGCCAAGGAAGCCTGCTTAGTCTCCTCCATGTACTGCAGTGGTCAATG
CCAGCTGGGCTGGGGCTACGTGACTGCCATCCTCAACGCAGTCCTGGCTAGCCTCCTGCC
CATGATCAAGTGGCCCCACGTGACTGAGGTCCAGCAAAGGACCATCCTCTTTTCCAGTGA
CAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGCTGCGATGCTCCTTGGAGGCTGGCTCCTACTGGCCTTCAATGCAATTCTCCTCCT
GTCCTGGGCCCTGGCCCCAAAGAGACTGTGCCCAAGGAGGGGCAGTGGCCCAATGCTGGG
GGTGCAAGCAGCAGCAGCCATTGCCACCATTGTGGGCCTGCTGGTTTTCCCCATCAGCTT
GGCCTCCCCATTCGCCAAGGAAGCCTGCTTAGTCTCCTCCATGTACTGCAGTGGTCAATG
CCAGCTGGGCTGGGGCTACGTGACTGCCATCCTCAACGCAGTCCTGGCTAGCCTCCTGCC
CATGATCAAGTGGCCCCACGTGACTGAGGTCCAGCAAAGGACCATCCTCTTTTCCAGTGA
CAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48717249|ref|NP_001001663.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48717249|ref|NP_001001663.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               135-363, gnl|bosTau2|chr17 (39695288-39695060)
               

               
               135-363, gnl|canFam2|chr26 (22094143-22094451)
               

               
               135-363, gnl|echTel1|scaffold_285408 (52303-52602)
               

               
               135-363, gnl|hg17|chr22 (23655832-23656140)
               

               
               135-363, gnl|Hg17|chr22 (23656119-23655891)
               

               
               135-363, gnl|mm7|chr5 (112426166-112425859)
               

               
               135-363, gnl|Mm7|chr5 (112425879-112426101)
               

               
               135-363, gnl|monDom2|scaffold_192 (66035-65729)
               

               
               135-363, gnl|oryCun1|scaffold_107666 (8362-8666)
               

               
               135-363, gnl|panTro1|chr23 (23732495-23732803)
               

               
               135-363, gnl|rheMac2|chr10 (69034778-69034470)
               

               
               135-363, gnl|rn3|chr12 (44265383-44265690)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-363, gnl|bosTau2|chr17 (39695288-39695060)
               

               
               135-363, gnl|canFam2|chr26 (22094143-22094451)
               

               
               135-363, gnl|echTel1|scaffold_285408 (52303-52602)
               

               
               135-363, gnl|hg17|chr22 (23655832-23656140)
               

               
               135-363, gnl|Hg17|chr22 (23656119-23655891)
               

               
               135-363, gnl|mm7|chr5 (112426166-112425859)
               

               
               135-363, gnl|Mm7|chr5 (112425879-112426101)
               

               
               135-363, gnl|monDom2|scaffold_192 (66035-65729)
               

               
               135-363, gnl|oryCun1|scaffold_107666 (8362-8666)
               

               
               135-363, gnl|panTro1|chr23 (23732495-23732803)
               

               
               135-363, gnl|rheMac2|chr10 (69034778-69034470)
               

               
               135-363, gnl|rn3|chr12 (44265383-44265690)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pan (0.23596)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)

	135-363, gnl\|bosTau2\|chr17 (39695288-39695060)
	135-363, gnl\|canFam2\|chr26 (22094143-22094451)
	135-363, gnl\|echTel1\|scaffold_285408 (52303-52602)
	135-363, gnl\|hg17\|chr22 (23655832-23656140)
	135-363, gnl\|Hg17\|chr22 (23656119-23655891)
	135-363, gnl\|mm7\|chr5 (112426166-112425859)
	135-363, gnl\|Mm7\|chr5 (112425879-112426101)
	135-363, gnl\|monDom2\|scaffold_192 (66035-65729)
	135-363, gnl\|oryCun1\|scaffold_107666 (8362-8666)
	135-363, gnl\|panTro1\|chr23 (23732495-23732803)
	135-363, gnl\|rheMac2\|chr10 (69034778-69034470)
	135-363, gnl\|rn3\|chr12 (44265383-44265690)