rpan11_m2.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGATCTATTCTTACATTCTGGGACGCTAGACTGTACAAAGTGGCAGTTGGATTTATGCT CGCCCACCCTTACGGATTCACACGAGTGATGTCAAGCTACCGTTGGGCAAGAAATTTTGT GAATGGACAAGATGTTAATGATTGGATTGGGCCACCAAATAATAACGGGGTCATTAAGGA AGTTACTATTAATGCAGATACTACCTGTGGCAATGACTGGGTCTGTGAGCATCGATGGCG TCAGATAAGGAACATGGTTTGGTTCCGTAACGTGGTGGACGGCCAACCTTTTGCAAACTG GTGGGATAACGGAAGCAACCAGGTAGCTTTTGGAAGAGGAAACAGAGGATTCATTGTCTT TAACAATGATGATTGGCAATTATCTTCAACTTTGCAAACTGGTCTTCCTGGTGGCACATA CTGTGATGTTATCTCTGGAGATAAAGTTGGTAGCAGTTGTACAGGAATTAAAGTCTATGT TTCCAGTGATGGCACAGCTCAGTTTTCTATTAGTAACTCTGCTGAAGATCCATTTATTGC AATTCATGCTGAATCCAAATTGTAAAATTTGAATTAAATACATCTTCCAAGAGCAAAAAA AA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGATCTATTCTTACATTCTGGGACGCTAGACTGTACAAAGTGGCAGTTGGATTTATGCT CGCCCACCCTTACGGATTCACACGAGTGATGTCAAGCTACCGTTGGGCAAGAAATTTTGT GAATGGACAAGATGTTAATGATTGGATTGGGCCACCAAATAATAACGGGGTCATTAAGGA AGTTACTATTAATGCAGATACTACCTGTGGCAATGACTGGGTCTGTGAGCATCGATGGCG TCAGATAAGGAACATGGTTTGGTTCCGTAACGTGGTGGACGGCCAACCTTTTGCAAACTG GTGGGATAACGGAAGCAACCAGGTAGCTTTTGGAAGAGGAAACAGAGGATTCATTGTCTT TAACAATGATGATTGGCAATTATCTTCAACTTTGCAAACTGGTCTTCCTGGTGGCACATA CTGTGATGTTATCTCTGGAGATAAAGTTGGTAGCAGTTGTACAGGAATTAAAGTCTATGT TTCCAGTGATGGCACAGCTCAGTTTTCTATTAGTAACTCTGCTGAAGATCCATTTATTGC AATTCATGCTGAATCCAAATTGTAAAATTTGAATTAAATACATCTTCCAAGAGCAAAAAA AA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 131-250, - strand, RNAz p=0.795481 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 131-250, - strand, RNAz p=0.795481 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 131-250, gnl|bosTau2|chr3 (33871125-33871006) | |
| 131-250, gnl|Hg17|chr1 (104011438-104011557) | |
| 131-250, gnl|Mm7|chr3 (113070012-113069893) | |
| 381-601, gnl|bosTau2|chr3 (33868686-33868461) | |
| 381-601, gnl|canFam2|chrUn (46719600-46719799) | |
| 381-601, gnl|danRer3|chr17 (47511583-47511399) | |
| 381-601, gnl|dasNov1|scaffold_86521 (8846-8651) | |
| 381-601, gnl|fr1|chrUn (224063644-224063466) | |
| 381-601, gnl|galGal2|chr8 (22607-22409) | |
| 381-601, gnl|hg17|chr1 (103880207-103880403) | |
| 381-601, gnl|Hg17|chr1 (104013117-104013341) | |
| 381-601, gnl|loxAfr1|scaffold_29899 (1432-1237) | |
| 381-601, gnl|mm7|chr3 (113132832-113132636) | |
| 381-601, gnl|Mm7|chr3 (113067553-113067329) | |
| 381-601, gnl|monDom2|scaffold_0 (14526502-14526309) | |
| 381-601, gnl|oryCun1|scaffold_170471 (4696-4891) | |
| 381-601, gnl|panTro1|chr1 (103049407-103049604) | |
| 381-601, gnl|rheMac2|chr1 (106597790-106597986) | |
| 381-601, gnl|rn3|chr2 (209470182-209469987) | |
| 381-601, gnl|tetNig1|chr15_random (2114141-2114321) | |
| 381-601, gnl|xenTro1|scaffold_466 (411881-412072) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-250, gnl|bosTau2|chr3 (33871125-33871006) | |
| 131-250, gnl|Hg17|chr1 (104011438-104011557) | |
| 131-250, gnl|Mm7|chr3 (113070012-113069893) | |
| 381-601, gnl|bosTau2|chr3 (33868686-33868461) | |
| 381-601, gnl|canFam2|chrUn (46719600-46719799) | |
| 381-601, gnl|danRer3|chr17 (47511583-47511399) | |
| 381-601, gnl|dasNov1|scaffold_86521 (8846-8651) | |
| 381-601, gnl|fr1|chrUn (224063644-224063466) | |
| 381-601, gnl|galGal2|chr8 (22607-22409) | |
| 381-601, gnl|hg17|chr1 (103880207-103880403) | |
| 381-601, gnl|Hg17|chr1 (104013117-104013341) | |
| 381-601, gnl|loxAfr1|scaffold_29899 (1432-1237) | |
| 381-601, gnl|mm7|chr3 (113132832-113132636) | |
| 381-601, gnl|Mm7|chr3 (113067553-113067329) | |
| 381-601, gnl|monDom2|scaffold_0 (14526502-14526309) | |
| 381-601, gnl|oryCun1|scaffold_170471 (4696-4891) | |
| 381-601, gnl|panTro1|chr1 (103049407-103049604) | |
| 381-601, gnl|rheMac2|chr1 (106597790-106597986) | |
| 381-601, gnl|rn3|chr2 (209470182-209469987) | |
| 381-601, gnl|tetNig1|chr15_random (2114141-2114321) | |
| 381-601, gnl|xenTro1|scaffold_466 (411881-412072) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) |