Non-Coding RNA Search

rpbfe0104_m14.y1

Sequence:


               
               CTCGTGCCGACATAGATGAAACACTTTCTATAAGGAAGTTGGATGTTTTGATTTTACTGT
TTATAGATGTTAGATTGTACAGATTTGTCTGTATTTTCCCACCATATCTAATGATACTTT
TTTCATTAGATTGGTCTTGCAGAGCAGTATTAGTTGTTATAATTGATTATTTTGGTTATT
CAGTATATGGTTAGCTCTTAGAGTTTAGCTTTATTCTCCATATTTATACTGTGGATTTAT
GACCAGAGATAGAGGTTATTTCAAGAAAAGTTTATGACCTTCATCTGAAGTCCAACTAAA
ATCAGTACTGGAAACAAAAGAAAACACCCTTTCAAGTTTACTTTTGTTTCTGTTTGCCAC
AAATAGTAGTGTTGATTTTTTTATTTGTTGTAAACCGGTTGCATTCACAATATTATTAGC
CTGAGATATTGATGATATTGTGATATGAAAATGTGTATATTCCCTGTTGCGACATCAGGC
TTGCAGGAAGAATGAAGCACTTACCATTAACTGAAATTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGTGCCGACATAGATGAAACACTTTCTATAAGGAAGTTGGATGTTTTGATTTTACTGT
TTATAGATGTTAGATTGTACAGATTTGTCTGTATTTTCCCACCATATCTAATGATACTTT
TTTCATTAGATTGGTCTTGCAGAGCAGTATTAGTTGTTATAATTGATTATTTTGGTTATT
CAGTATATGGTTAGCTCTTAGAGTTTAGCTTTATTCTCCATATTTATACTGTGGATTTAT
GACCAGAGATAGAGGTTATTTCAAGAAAAGTTTATGACCTTCATCTGAAGTCCAACTAAA
ATCAGTACTGGAAACAAAAGAAAACACCCTTTCAAGTTTACTTTTGTTTCTGTTTGCCAC
AAATAGTAGTGTTGATTTTTTTATTTGTTGTAAACCGGTTGCATTCACAATATTATTAGC
CTGAGATATTGATGATATTGTGATATGAAAATGTGTATATTCCCTGTTGCGACATCAGGC
TTGCAGGAAGAATGAAGCACTTACCATTAACTGAAATTGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               10-208, - strand, RNAz p=0.998349
               

               
               280-383, + strand, RNAz p=0.996976

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-208, - strand, RNAz p=0.998349
               

               
               280-383, + strand, RNAz p=0.996976

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               20-208, 510803 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM106844.1|), 
blast E-value=0, identity=96.3% 
               

               
               10-208, CH3#005_G04T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU746669.1|), blast E-value=0, identity=95.98% 
               

               
               10-208, 690775 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB440487.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 691159 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB440851.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 705427 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB450743.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 706035 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB451277.1|), 
blast E-value=0, identity=95.98%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               20-208, 510803 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM106844.1|), 
blast E-value=0, identity=96.3% 
               

               
               10-208, CH3#005_G04T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU746669.1|), blast E-value=0, identity=95.98% 
               

               
               10-208, 690775 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB440487.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 691159 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB440851.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 705427 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB450743.1|), 
blast E-value=0, identity=95.98% 
               

               
               10-208, 706035 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB451277.1|), 
blast E-value=0, identity=95.98%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-522, gnl|bosTau2|chr9 (34995816-34995301)
               

               
               10-522, gnl|Hg17|chr6 (88029382-88029889)
               

               
               10-522, gnl|Mm7|chr4 (34942542-34942042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-522, gnl|bosTau2|chr9 (34995816-34995301)
               

               
               10-522, gnl|Hg17|chr6 (88029382-88029889)
               

               
               10-522, gnl|Mm7|chr4 (34942542-34942042)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bfe (0.149858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)

	10-208, - strand, RNAz p=0.998349
	280-383, + strand, RNAz p=0.996976

	20-208, 510803 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM106844.1\|), blast E-value=0, identity=96.3%
	10-208, CH3#005_G04T3 Canine heart normalized cDNA Library in pBluescript (gb\|BU746669.1\|), blast E-value=0, identity=95.98%
	10-208, 690775 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB440487.1\|), blast E-value=0, identity=95.98%
	10-208, 691159 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB440851.1\|), blast E-value=0, identity=95.98%
	10-208, 705427 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB450743.1\|), blast E-value=0, identity=95.98%
	10-208, 706035 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB451277.1\|), blast E-value=0, identity=95.98%

	10-522, gnl\|bosTau2\|chr9 (34995816-34995301)
	10-522, gnl\|Hg17\|chr6 (88029382-88029889)
	10-522, gnl\|Mm7\|chr4 (34942542-34942042)