Non-Coding RNA Search

rpbfe0105_d20.y1

Sequence:


               
               GTATTTTTAAGTGGTTTGAGAAAGAGGAAGGCTATTGGTGGAAAGGGGAGAAAAAGCCCA
ACCAGTTGTCTATCTATATTAGATAGATCCATGTGTGTATACACACAATATGCCATACCC
ACACCTCTCTGTAAAAGTACCTTTTCAAACAAAGAAAGGAAGGTAATTTGTTCATCTAAT
TTTGTTTTCTCTTGAAATTCAGTCCAACCTGGAAGTGGTGTAGGTAAATAATAATAACAT
TCTTCCTTTTCTCTTCCTGTAGGGTGCTGGAGATCTAGAAGACCCATGGTAGCCTTATAA
ACCTTCTAAATGCTTTTGATTCTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATTTTTAAGTGGTTTGAGAAAGAGGAAGGCTATTGGTGGAAAGGGGAGAAAAAGCCCA
ACCAGTTGTCTATCTATATTAGATAGATCCATGTGTGTATACACACAATATGCCATACCC
ACACCTCTCTGTAAAAGTACCTTTTCAAACAAAGAAAGGAAGGTAATTTGTTCATCTAAT
TTTGTTTTCTCTTGAAATTCAGTCCAACCTGGAAGTGGTGTAGGTAAATAATAATAACAT
TCTTCCTTTTCTCTTCCTGTAGGGTGCTGGAGATCTAGAAGACCCATGGTAGCCTTATAA
ACCTTCTAAATGCTTTTGATTCTGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-151, - strand, RNAz p=0.951926

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-151, - strand, RNAz p=0.951926

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               2-328, gnl|bosTau2|chr11 (13411534-13411864)
               

               
               2-328, gnl|canFam2|chr10 (49791789-49792089)
               

               
               2-328, gnl|echTel1|scaffold_309069 (18191-17912)
               

               
               2-328, gnl|galGal2|chr3 (21805904-21806220)
               

               
               2-328, gnl|hg17|chr2 (44370785-44371083)
               

               
               2-328, gnl|Hg17|chr2 (44370852-44371172)
               

               
               2-328, gnl|loxAfr1|scaffold_16087 (11720-11442)
               

               
               2-328, gnl|mm7|chr17 (83309931-83310235)
               

               
               2-328, gnl|Mm7|chr17 (83310003-83310323)
               

               
               2-328, gnl|monDom2|scaffold_1 (2948796-2949033)
               

               
               2-328, gnl|oryCun1|scaffold_208713 (19430-19728)
               

               
               2-328, gnl|panTro1|chr12 (46045587-46045885)
               

               
               2-328, gnl|rn3|chr6 (8371690-8372047)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-328, gnl|bosTau2|chr11 (13411534-13411864)
               

               
               2-328, gnl|canFam2|chr10 (49791789-49792089)
               

               
               2-328, gnl|echTel1|scaffold_309069 (18191-17912)
               

               
               2-328, gnl|galGal2|chr3 (21805904-21806220)
               

               
               2-328, gnl|hg17|chr2 (44370785-44371083)
               

               
               2-328, gnl|Hg17|chr2 (44370852-44371172)
               

               
               2-328, gnl|loxAfr1|scaffold_16087 (11720-11442)
               

               
               2-328, gnl|mm7|chr17 (83309931-83310235)
               

               
               2-328, gnl|Mm7|chr17 (83310003-83310323)
               

               
               2-328, gnl|monDom2|scaffold_1 (2948796-2949033)
               

               
               2-328, gnl|oryCun1|scaffold_208713 (19430-19728)
               

               
               2-328, gnl|panTro1|chr12 (46045587-46045885)
               

               
               2-328, gnl|rn3|chr6 (8371690-8372047)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bfe (0.149858)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)

	2-328, gnl\|bosTau2\|chr11 (13411534-13411864)
	2-328, gnl\|canFam2\|chr10 (49791789-49792089)
	2-328, gnl\|echTel1\|scaffold_309069 (18191-17912)
	2-328, gnl\|galGal2\|chr3 (21805904-21806220)
	2-328, gnl\|hg17\|chr2 (44370785-44371083)
	2-328, gnl\|Hg17\|chr2 (44370852-44371172)
	2-328, gnl\|loxAfr1\|scaffold_16087 (11720-11442)
	2-328, gnl\|mm7\|chr17 (83309931-83310235)
	2-328, gnl\|Mm7\|chr17 (83310003-83310323)
	2-328, gnl\|monDom2\|scaffold_1 (2948796-2949033)
	2-328, gnl\|oryCun1\|scaffold_208713 (19430-19728)
	2-328, gnl\|panTro1\|chr12 (46045587-46045885)
	2-328, gnl\|rn3\|chr6 (8371690-8372047)