Non-Coding RNA Search

rpbfe0135_k3.y1

Sequence:


               
               AAATTGGCTTTATTTATAAGATTATATTCTAAGTATGATTCTATCCTAAGTAAACAAAAA
GTAGTTAATAGTGCCATTCAAGTTGATGGATTGAATTAATGTGGTTGAAAAATAACATTT
GGGATTCACTGGATTATCTTATCACAAGTGGCTGCAGAAAATGTTTCTCTTATTCCTTAC
CCAAAGAGGATGGGGTTAATTATTAAAATAAAATCATTGTCAGCTCCTAATTATCTATAG
ATTTTAGCAGCTTAATTACCATTATCTTAATGTTTCTTAAAGCCAATTCCTTAATGTATG
CAGTTACTTGCCTTTTTTCTAATTAGTATATCCTACACTGAACTTTTTCAATGGACCATC
ATCTGCTTTTTCGCATGTTTCATTGGATTGTTCATACTTGCCTGTTTAATGAGAATGTTG
CATAGTTTGTGTCTTTTGAACATAGGTTTTCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTGGCTTTATTTATAAGATTATATTCTAAGTATGATTCTATCCTAAGTAAACAAAAA
GTAGTTAATAGTGCCATTCAAGTTGATGGATTGAATTAATGTGGTTGAAAAATAACATTT
GGGATTCACTGGATTATCTTATCACAAGTGGCTGCAGAAAATGTTTCTCTTATTCCTTAC
CCAAAGAGGATGGGGTTAATTATTAAAATAAAATCATTGTCAGCTCCTAATTATCTATAG
ATTTTAGCAGCTTAATTACCATTATCTTAATGTTTCTTAAAGCCAATTCCTTAATGTATG
CAGTTACTTGCCTTTTTTCTAATTAGTATATCCTACACTGAACTTTTTCAATGGACCATC
ATCTGCTTTTTCGCATGTTTCATTGGATTGTTCATACTTGCCTGTTTAATGAGAATGTTG
CATAGTTTGTGTCTTTTGAACATAGGTTTTCTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-456, - strand, RNAz p=0.863106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-456, - strand, RNAz p=0.863106

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-456, gnl|bosTau2|chr20 (5286919-5287372)
               

               
               1-456, gnl|Hg17|chr5 (72229940-72230386)
               

               
               1-456, gnl|Mm7|chr13 (95921562-95921145)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr20 (5286919-5287372)
               

               
               1-456, gnl|Hg17|chr5 (72229940-72230386)
               

               
               1-456, gnl|Mm7|chr13 (95921562-95921145)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bfe (0.149858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)

	1-456, gnl\|bosTau2\|chr20 (5286919-5287372)
	1-456, gnl\|Hg17\|chr5 (72229940-72230386)
	1-456, gnl\|Mm7\|chr13 (95921562-95921145)