Non-Coding RNA Search

rpfco0101_l13.y1

Sequence:


               
               GAAAATATATATAGTGCTATTTAAAAAATGTCTGGTCTCTATTTCCTTTTTGCACCAGTC
TTAACACTAAAATATGTCTGGCTAGTGAGGTTTTTATGATATGCTGGTCCTAATGCAAGG
GAGTTATTTATAGTCATTTATTTTAAAACTGAAAATAAGTGAAAAATGATTAATCAAGTT
AACATTGTTACTCCTTGTGACAAAATTTTATAAGTAAATTTAAAAATACATGATGTAAAT
TAGGAGATTCAACAATAAAACACTACCTTCCAGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATATATATAGTGCTATTTAAAAAATGTCTGGTCTCTATTTCCTTTTTGCACCAGTC
TTAACACTAAAATATGTCTGGCTAGTGAGGTTTTTATGATATGCTGGTCCTAATGCAAGG
GAGTTATTTATAGTCATTTATTTTAAAACTGAAAATAAGTGAAAAATGATTAATCAAGTT
AACATTGTTACTCCTTGTGACAAAATTTTATAAGTAAATTTAAAAATACATGATGTAAAT
TAGGAGATTCAACAATAAAACACTACCTTCCAGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-276, gnl|bosTau2|chr13 (23895359-23895631)
               

               
               2-276, gnl|canFam2|chr24 (8507045-8506677)
               

               
               2-276, gnl|dasNov1|scaffold_22263 (7938-7573)
               

               
               2-276, gnl|Hg17|chr20 (17412947-17413223)
               

               
               2-276, gnl|hg17|chr8 (115476476-115476852)
               

               
               2-276, gnl|loxAfr1|scaffold_57373 (5143-5504)
               

               
               2-276, gnl|mm7|chr2 (143556785-143557154)
               

               
               2-276, gnl|Mm7|chr2 (143556879-143557140)
               

               
               2-276, gnl|monDom2|scaffold_1 (51922978-51923387)
               

               
               2-276, gnl|oryCun1|scaffold_179021 (46363-46001)
               

               
               2-276, gnl|panTro1|chr7 (118039505-118039877)
               

               
               2-276, gnl|rheMac2|chr8 (116872661-116873043)
               

               
               2-276, gnl|rn3|chr3 (132163619-132163989)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-276, gnl|bosTau2|chr13 (23895359-23895631)
               

               
               2-276, gnl|canFam2|chr24 (8507045-8506677)
               

               
               2-276, gnl|dasNov1|scaffold_22263 (7938-7573)
               

               
               2-276, gnl|Hg17|chr20 (17412947-17413223)
               

               
               2-276, gnl|hg17|chr8 (115476476-115476852)
               

               
               2-276, gnl|loxAfr1|scaffold_57373 (5143-5504)
               

               
               2-276, gnl|mm7|chr2 (143556785-143557154)
               

               
               2-276, gnl|Mm7|chr2 (143556879-143557140)
               

               
               2-276, gnl|monDom2|scaffold_1 (51922978-51923387)
               

               
               2-276, gnl|oryCun1|scaffold_179021 (46363-46001)
               

               
               2-276, gnl|panTro1|chr7 (118039505-118039877)
               

               
               2-276, gnl|rheMac2|chr8 (116872661-116873043)
               

               
               2-276, gnl|rn3|chr3 (132163619-132163989)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	2-276, gnl\|bosTau2\|chr13 (23895359-23895631)
	2-276, gnl\|canFam2\|chr24 (8507045-8506677)
	2-276, gnl\|dasNov1\|scaffold_22263 (7938-7573)
	2-276, gnl\|Hg17\|chr20 (17412947-17413223)
	2-276, gnl\|hg17\|chr8 (115476476-115476852)
	2-276, gnl\|loxAfr1\|scaffold_57373 (5143-5504)
	2-276, gnl\|mm7\|chr2 (143556785-143557154)
	2-276, gnl\|Mm7\|chr2 (143556879-143557140)
	2-276, gnl\|monDom2\|scaffold_1 (51922978-51923387)
	2-276, gnl\|oryCun1\|scaffold_179021 (46363-46001)
	2-276, gnl\|panTro1\|chr7 (118039505-118039877)
	2-276, gnl\|rheMac2\|chr8 (116872661-116873043)
	2-276, gnl\|rn3\|chr3 (132163619-132163989)