Non-Coding RNA Search

rpfco0104_g15.y1

Sequence:


               
               GTGGTAGTAATTTATTTTCTACTTGGCTAATGGATTTCACAATTAATGTATAAGCGTGAA
AGAGACCTTTATGCATTTTCTTGGGCAGTATTCTGTTTTATGGCCAACAACTGCATATGG
CATGCTAAGGAGTAATTCCTATGACTATAGAGACTTCCATTAATTCCTGAGGACCCCTTA
GAACACACTAATGGGGAAATGGGAGGACTAGCTGGCTCCCTTTACTATGCTGTTGTAATT
GCCACACACGTTTTTTCTTAAAGCAAGAAACTATTGGCTGCATTTTGACAAAAACTTTAA
AACTGGCTTTTTCATTCAGCACTACAATTGCTTAAAATAGGAATTTCTAGATCAAGGCTA
TCTGGTGGGCATTAAAATGTTCTTCATATTAGAATGAATCAGGCACATGTTGGGAAAGAT
CATTATGTTAGAACTTATCTTTACAGATACTGCAAACAATTTGGTTCACCCTCCCCTTAT
CCCTTATACTGATTTCTATAACTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTAGTAATTTATTTTCTACTTGGCTAATGGATTTCACAATTAATGTATAAGCGTGAA
AGAGACCTTTATGCATTTTCTTGGGCAGTATTCTGTTTTATGGCCAACAACTGCATATGG
CATGCTAAGGAGTAATTCCTATGACTATAGAGACTTCCATTAATTCCTGAGGACCCCTTA
GAACACACTAATGGGGAAATGGGAGGACTAGCTGGCTCCCTTTACTATGCTGTTGTAATT
GCCACACACGTTTTTTCTTAAAGCAAGAAACTATTGGCTGCATTTTGACAAAAACTTTAA
AACTGGCTTTTTCATTCAGCACTACAATTGCTTAAAATAGGAATTTCTAGATCAAGGCTA
TCTGGTGGGCATTAAAATGTTCTTCATATTAGAATGAATCAGGCACATGTTGGGAAAGAT
CATTATGTTAGAACTTATCTTTACAGATACTGCAAACAATTTGGTTCACCCTCCCCTTAT
CCCTTATACTGATTTCTATAACTCTA

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-171, gnl|bosTau2|chr26 (5877696-5877528)
               

               
               1-171, gnl|canFam2|chr28 (9040836-9041202)
               

               
               1-171, gnl|dasNov1|scaffold_41808 (29672-30053)
               

               
               1-171, gnl|echTel1|scaffold_314444 (165528-165890)
               

               
               1-171, gnl|hg17|chr10 (93234404-93234725)
               

               
               1-171, gnl|Hg17|chr10 (93234516-93234664)
               

               
               1-171, gnl|mm7|chr19 (36299732-36300101)
               

               
               1-171, gnl|Mm7|chr19 (36299843-36300006)
               

               
               1-171, gnl|monDom2|scaffold_14 (31108129-31107738)
               

               
               1-171, gnl|oryCun1|scaffold_75395 (1272-1664)
               

               
               1-171, gnl|panTro1|chr8 (94957228-94957549)
               

               
               1-171, gnl|rheMac2|chr9 (90984110-90984431)
               

               
               1-171, gnl|rn3|chr1 (241020417-241020778)
               

               
               1-171, gnl|xenTro1|scaffold_180 (1831633-1831279)
               


               
               211-506, gnl|bosTau2|chr26 (5877517-5877219)
               

               
               211-506, gnl|Hg17|chr10 (93234678-93234976)
               

               
               211-506, gnl|Mm7|chr19 (36300058-36300340)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-171, gnl|bosTau2|chr26 (5877696-5877528)
               

               
               1-171, gnl|canFam2|chr28 (9040836-9041202)
               

               
               1-171, gnl|dasNov1|scaffold_41808 (29672-30053)
               

               
               1-171, gnl|echTel1|scaffold_314444 (165528-165890)
               

               
               1-171, gnl|hg17|chr10 (93234404-93234725)
               

               
               1-171, gnl|Hg17|chr10 (93234516-93234664)
               

               
               1-171, gnl|mm7|chr19 (36299732-36300101)
               

               
               1-171, gnl|Mm7|chr19 (36299843-36300006)
               

               
               1-171, gnl|monDom2|scaffold_14 (31108129-31107738)
               

               
               1-171, gnl|oryCun1|scaffold_75395 (1272-1664)
               

               
               1-171, gnl|panTro1|chr8 (94957228-94957549)
               

               
               1-171, gnl|rheMac2|chr9 (90984110-90984431)
               

               
               1-171, gnl|rn3|chr1 (241020417-241020778)
               

               
               1-171, gnl|xenTro1|scaffold_180 (1831633-1831279)
               


               
               211-506, gnl|bosTau2|chr26 (5877517-5877219)
               

               
               211-506, gnl|Hg17|chr10 (93234678-93234976)
               

               
               211-506, gnl|Mm7|chr19 (36300058-36300340)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-171, gnl\|bosTau2\|chr26 (5877696-5877528)
	1-171, gnl\|canFam2\|chr28 (9040836-9041202)
	1-171, gnl\|dasNov1\|scaffold_41808 (29672-30053)
	1-171, gnl\|echTel1\|scaffold_314444 (165528-165890)
	1-171, gnl\|hg17\|chr10 (93234404-93234725)
	1-171, gnl\|Hg17\|chr10 (93234516-93234664)
	1-171, gnl\|mm7\|chr19 (36299732-36300101)
	1-171, gnl\|Mm7\|chr19 (36299843-36300006)
	1-171, gnl\|monDom2\|scaffold_14 (31108129-31107738)
	1-171, gnl\|oryCun1\|scaffold_75395 (1272-1664)
	1-171, gnl\|panTro1\|chr8 (94957228-94957549)
	1-171, gnl\|rheMac2\|chr9 (90984110-90984431)
	1-171, gnl\|rn3\|chr1 (241020417-241020778)
	1-171, gnl\|xenTro1\|scaffold_180 (1831633-1831279)

	211-506, gnl\|bosTau2\|chr26 (5877517-5877219)
	211-506, gnl\|Hg17\|chr10 (93234678-93234976)
	211-506, gnl\|Mm7\|chr19 (36300058-36300340)