Non-Coding RNA Search

rpfco0115_a21.y1

Sequence:


               
               GGTTCAAAAAAAAAAAAAATTGTCAGCATTAAGGTAGAGAGACAGATTTGAAAATACTTT
CTTAAGAGATCATGTAACTATATAACTCTGAATTTAAAAATTGAGGAGGAGGGATCTTTT
CAACCCACTGCCTCTTACAAGAAACATGTTTTTTAAATCTGTAACTGCTTTAGTGTTAAC
AGGGTACAAAGTGTTTTTTGTCCTGTATTGTACTTTAAAGGTTCTCATTGATTGGTGATT
GTACTGTACTGTATGAAAACAAGTCATAAATTGCCTTGTATTGTTTCTAATAGACCATAC
CATGTACTACTTCAGTTTTCATGTTCCAGATTTTTCAGTGATGCATGTTAACAGTTAGGT
CCTAAAATTCTGTGGTGCTAATTCTTCCATATCCAATGGTGCTTTGTGGATGCTAACTGC
ACACATGCTGAACAAAGCTTGAAGTTTAAAACTTTCCTTCCTTCCTCTGTTTATATCAAG
TACAATAAAATAACTTGAATTTGTCTCAAAGTATCACTGACAATCTAATAAATTGATTTA
TATGTGTGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCAAAAAAAAAAAAAATTGTCAGCATTAAGGTAGAGAGACAGATTTGAAAATACTTT
CTTAAGAGATCATGTAACTATATAACTCTGAATTTAAAAATTGAGGAGGAGGGATCTTTT
CAACCCACTGCCTCTTACAAGAAACATGTTTTTTAAATCTGTAACTGCTTTAGTGTTAAC
AGGGTACAAAGTGTTTTTTGTCCTGTATTGTACTTTAAAGGTTCTCATTGATTGGTGATT
GTACTGTACTGTATGAAAACAAGTCATAAATTGCCTTGTATTGTTTCTAATAGACCATAC
CATGTACTACTTCAGTTTTCATGTTCCAGATTTTTCAGTGATGCATGTTAACAGTTAGGT
CCTAAAATTCTGTGGTGCTAATTCTTCCATATCCAATGGTGCTTTGTGGATGCTAACTGC
ACACATGCTGAACAAAGCTTGAAGTTTAAAACTTTCCTTCCTTCCTCTGTTTATATCAAG
TACAATAAAATAACTTGAATTTGTCTCAAAGTATCACTGACAATCTAATAAATTGATTTA
TATGTGTGAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               43-160, - strand, RNAz p=0.567862
               

               
               321-437, - strand, RNAz p=0.916964

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-160, - strand, RNAz p=0.567862
               

               
               321-437, - strand, RNAz p=0.916964

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               10-549, gnl|bosTau2|chr27 (14145430-14145971)
               

               
               10-549, gnl|canFam2|chr16 (36295139-36294746)
               

               
               10-549, gnl|echTel1|scaffold_172439 (991-1386)
               

               
               10-549, gnl|galGal2|chr4 (35116565-35116964)
               

               
               10-549, gnl|hg17|chr8 (30972862-30973254)
               

               
               10-549, gnl|Hg17|chr8 (30973403-30972860)
               

               
               10-549, gnl|loxAfr1|scaffold_1073 (137452-137845)
               

               
               10-549, gnl|mm7|chr8 (32185338-32184944)
               

               
               10-549, gnl|Mm7|chr8 (32184791-32185338)
               

               
               10-549, gnl|monDom2|scaffold_32 (11151589-11151202)
               

               
               10-549, gnl|oryCun1|scaffold_193059 (7267-6875)
               

               
               10-549, gnl|panTro1|chr7 (32062454-32062846)
               

               
               10-549, gnl|rheMac2|chr8 (31257002-31257394)
               

               
               10-549, gnl|rn3|chr16 (62504664-62505056)
               

               
               10-549, gnl|xenTro1|scaffold_242 (989290-989673)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-549, gnl|bosTau2|chr27 (14145430-14145971)
               

               
               10-549, gnl|canFam2|chr16 (36295139-36294746)
               

               
               10-549, gnl|echTel1|scaffold_172439 (991-1386)
               

               
               10-549, gnl|galGal2|chr4 (35116565-35116964)
               

               
               10-549, gnl|hg17|chr8 (30972862-30973254)
               

               
               10-549, gnl|Hg17|chr8 (30973403-30972860)
               

               
               10-549, gnl|loxAfr1|scaffold_1073 (137452-137845)
               

               
               10-549, gnl|mm7|chr8 (32185338-32184944)
               

               
               10-549, gnl|Mm7|chr8 (32184791-32185338)
               

               
               10-549, gnl|monDom2|scaffold_32 (11151589-11151202)
               

               
               10-549, gnl|oryCun1|scaffold_193059 (7267-6875)
               

               
               10-549, gnl|panTro1|chr7 (32062454-32062846)
               

               
               10-549, gnl|rheMac2|chr8 (31257002-31257394)
               

               
               10-549, gnl|rn3|chr16 (62504664-62505056)
               

               
               10-549, gnl|xenTro1|scaffold_242 (989290-989673)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	43-160, - strand, RNAz p=0.567862
	321-437, - strand, RNAz p=0.916964

	10-549, gnl\|bosTau2\|chr27 (14145430-14145971)
	10-549, gnl\|canFam2\|chr16 (36295139-36294746)
	10-549, gnl\|echTel1\|scaffold_172439 (991-1386)
	10-549, gnl\|galGal2\|chr4 (35116565-35116964)
	10-549, gnl\|hg17\|chr8 (30972862-30973254)
	10-549, gnl\|Hg17\|chr8 (30973403-30972860)
	10-549, gnl\|loxAfr1\|scaffold_1073 (137452-137845)
	10-549, gnl\|mm7\|chr8 (32185338-32184944)
	10-549, gnl\|Mm7\|chr8 (32184791-32185338)
	10-549, gnl\|monDom2\|scaffold_32 (11151589-11151202)
	10-549, gnl\|oryCun1\|scaffold_193059 (7267-6875)
	10-549, gnl\|panTro1\|chr7 (32062454-32062846)
	10-549, gnl\|rheMac2\|chr8 (31257002-31257394)
	10-549, gnl\|rn3\|chr16 (62504664-62505056)
	10-549, gnl\|xenTro1\|scaffold_242 (989290-989673)