Non-Coding RNA Search

rpfco0118_a10.y1

Sequence:


               
               TTATCCTAGGACTAGTGGATATAATTAATGTATTAATTCTTTTTAAAGCATTCTTACTTG
TGTGTGGAAATGTTATGTCTGGGGTACTTACATGATAGAACTTGACTATATGAGGTACTA
TTAGTCTTTCAAATTGACTTTAAAAATGTATATCTTTATGATTTTTATCATAAAGACCTA
CAAGACTTGTAACTAAAAAACTTAGTATGATGAAAAGAAATCATATCTAAAAATGTACCC
TGCCTTGCATATAAACCAATGTAGAAGTTTGGACTTATAAAAAGGCAAATGGTATATAAA
AAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCCTAGGACTAGTGGATATAATTAATGTATTAATTCTTTTTAAAGCATTCTTACTTG
TGTGTGGAAATGTTATGTCTGGGGTACTTACATGATAGAACTTGACTATATGAGGTACTA
TTAGTCTTTCAAATTGACTTTAAAAATGTATATCTTTATGATTTTTATCATAAAGACCTA
CAAGACTTGTAACTAAAAAACTTAGTATGATGAAAAGAAATCATATCTAAAAATGTACCC
TGCCTTGCATATAAACCAATGTAGAAGTTTGGACTTATAAAAAGGCAAATGGTATATAAA
AAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               75-264, - strand, RNAz p=0.913253
               

               
               76-265, - strand, RNAz p=0.858804

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-264, - strand, RNAz p=0.913253
               

               
               76-265, - strand, RNAz p=0.858804

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-298, gnl|bosTau2|chr16 (53966955-53966663)
               

               
               1-298, gnl|canFam2|chr7 (8541517-8541015)
               

               
               1-298, gnl|dasNov1|scaffold_42868 (3583-3072)
               

               
               1-298, gnl|echTel1|scaffold_318855 (4951-4437)
               

               
               1-298, gnl|hg17|chr1 (193857951-193858485)
               

               
               1-298, gnl|Hg17|chr1 (193858424-193858117)
               

               
               1-298, gnl|loxAfr1|scaffold_11694 (43067-42540)
               

               
               1-298, gnl|mm7|chr1 (139332796-139332301)
               

               
               1-298, gnl|Mm7|chr1 (139332363-139332649)
               

               
               1-298, gnl|monDom2|scaffold_16 (56396029-56396397)
               

               
               1-298, gnl|oryCun1|scaffold_178333 (42950-43468)
               

               
               1-298, gnl|panTro1|chr1 (176506773-176507307)
               

               
               1-298, gnl|rheMac2|chr1 (173384508-173383982)
               

               
               1-298, gnl|rn3|chr13 (52819002-52818491)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-298, gnl|bosTau2|chr16 (53966955-53966663)
               

               
               1-298, gnl|canFam2|chr7 (8541517-8541015)
               

               
               1-298, gnl|dasNov1|scaffold_42868 (3583-3072)
               

               
               1-298, gnl|echTel1|scaffold_318855 (4951-4437)
               

               
               1-298, gnl|hg17|chr1 (193857951-193858485)
               

               
               1-298, gnl|Hg17|chr1 (193858424-193858117)
               

               
               1-298, gnl|loxAfr1|scaffold_11694 (43067-42540)
               

               
               1-298, gnl|mm7|chr1 (139332796-139332301)
               

               
               1-298, gnl|Mm7|chr1 (139332363-139332649)
               

               
               1-298, gnl|monDom2|scaffold_16 (56396029-56396397)
               

               
               1-298, gnl|oryCun1|scaffold_178333 (42950-43468)
               

               
               1-298, gnl|panTro1|chr1 (176506773-176507307)
               

               
               1-298, gnl|rheMac2|chr1 (173384508-173383982)
               

               
               1-298, gnl|rn3|chr13 (52819002-52818491)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	75-264, - strand, RNAz p=0.913253
	76-265, - strand, RNAz p=0.858804

	1-298, gnl\|bosTau2\|chr16 (53966955-53966663)
	1-298, gnl\|canFam2\|chr7 (8541517-8541015)
	1-298, gnl\|dasNov1\|scaffold_42868 (3583-3072)
	1-298, gnl\|echTel1\|scaffold_318855 (4951-4437)
	1-298, gnl\|hg17\|chr1 (193857951-193858485)
	1-298, gnl\|Hg17\|chr1 (193858424-193858117)
	1-298, gnl\|loxAfr1\|scaffold_11694 (43067-42540)
	1-298, gnl\|mm7\|chr1 (139332796-139332301)
	1-298, gnl\|Mm7\|chr1 (139332363-139332649)
	1-298, gnl\|monDom2\|scaffold_16 (56396029-56396397)
	1-298, gnl\|oryCun1\|scaffold_178333 (42950-43468)
	1-298, gnl\|panTro1\|chr1 (176506773-176507307)
	1-298, gnl\|rheMac2\|chr1 (173384508-173383982)
	1-298, gnl\|rn3\|chr13 (52819002-52818491)