Non-Coding RNA Search

rpfco0118_b21.y1

Sequence:


               
               AGTGATTCAACCGTTCCTTTATTCTGTGAATGTTTTCACTTTTATTATGAAAGATTTCAA
AATTAAAGAGTACAGAGACTGATATAATGAGTGTGTAACACCACCAAATTTAACAGTGTT
AACATTATACCATATTTGCTTCAGATCTATTTGTAGTGTTGAATATTGTGGCTAGAGTTA
AAAAGTCCCTTTGTACATTCTATCCATTCTCCATCCTCCCTATAGGTAACCACTATTCTG
AAGTTGATGTATATTATTTCTGTACGTGCTTTTATACCTTTTCTGCATATGTATGTATCC
ATAAATAATATGTAGTCTTTTATGTGTTTTTAAACTTTATGCAATGATCTCATATTCTTA
TATGTACTCTGCAACTTTCGTTTTTCACTCAACATTATTTTGAAGATTTGTTTGTGTTAA
CAATGTAGATCTAGTTGGGTTTTTTTAAAAACACTGTATGATATATGATGTATACCTATT
GTTAGACATTGGGATTATTTCCAGTTTTTTGGTGTGTGTGCAGTGTGTGAAGTGAATATG
CAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGATTCAACCGTTCCTTTATTCTGTGAATGTTTTCACTTTTATTATGAAAGATTTCAA
AATTAAAGAGTACAGAGACTGATATAATGAGTGTGTAACACCACCAAATTTAACAGTGTT
AACATTATACCATATTTGCTTCAGATCTATTTGTAGTGTTGAATATTGTGGCTAGAGTTA
AAAAGTCCCTTTGTACATTCTATCCATTCTCCATCCTCCCTATAGGTAACCACTATTCTG
AAGTTGATGTATATTATTTCTGTACGTGCTTTTATACCTTTTCTGCATATGTATGTATCC
ATAAATAATATGTAGTCTTTTATGTGTTTTTAAACTTTATGCAATGATCTCATATTCTTA
TATGTACTCTGCAACTTTCGTTTTTCACTCAACATTATTTTGAAGATTTGTTTGTGTTAA
CAATGTAGATCTAGTTGGGTTTTTTTAAAAACACTGTATGATATATGATGTATACCTATT
GTTAGACATTGGGATTATTTCCAGTTTTTTGGTGTGTGTGCAGTGTGTGAAGTGAATATG
CAGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-223, + strand, RNAz p=0.866903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-223, + strand, RNAz p=0.866903

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr11 (20647420-20646863)
               

               
               1-546, gnl|Hg17|chr2 (55753646-55753134)
               

               
               1-546, gnl|Mm7|chr11 (29127337-29127821)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr11 (20647420-20646863)
               

               
               1-546, gnl|Hg17|chr2 (55753646-55753134)
               

               
               1-546, gnl|Mm7|chr11 (29127337-29127821)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-546, gnl\|bosTau2\|chr11 (20647420-20646863)
	1-546, gnl\|Hg17\|chr2 (55753646-55753134)
	1-546, gnl\|Mm7\|chr11 (29127337-29127821)