Non-Coding RNA Search

rpfco0120_d5.y1

Sequence:


               
               CTCTAACTTCAGTTAGCGTTGGGAAGACATGCTAGAAAAAATGAGGGAGGGTTTTCAGAA
TGCAGACAATGTCAACAAGAAATCCATTCTACACCTCACGGGTAGTTAAGTGACTGAAGA
GTCCTACACAGTCCGAAAGCCTCAAACATCTGAAACAGAAGCAACCGATTTTAGGAGACT
AAATCTTTGACAGCTGAATGCTTTCACTTGTGCAGAAAGTAAACCTGTCTTCTGTTTTTG
CCAAACAAAATGTAGTCTTTGAAAGTATAATTAGTCCTGAAGCCAAAAAAAAAAAAAAAA
AAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAACTTCAGTTAGCGTTGGGAAGACATGCTAGAAAAAATGAGGGAGGGTTTTCAGAA
TGCAGACAATGTCAACAAGAAATCCATTCTACACCTCACGGGTAGTTAAGTGACTGAAGA
GTCCTACACAGTCCGAAAGCCTCAAACATCTGAAACAGAAGCAACCGATTTTAGGAGACT
AAATCTTTGACAGCTGAATGCTTTCACTTGTGCAGAAAGTAAACCTGTCTTCTGTTTTTG
CCAAACAAAATGTAGTCTTTGAAAGTATAATTAGTCCTGAAGCCAAAAAAAAAAAAAAAA
AAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-292, gnl|bosTau2|chr14 (25999358-25999078)
               

               
               2-292, gnl|canFam2|chr13 (21190412-21190703)
               

               
               2-292, gnl|dasNov1|scaffold_152620 (3832-4095)
               

               
               2-292, gnl|echTel1|scaffold_314311 (36187-35913)
               

               
               2-292, gnl|hg17|chr8 (120006882-120007154)
               

               
               2-292, gnl|Hg17|chr8 (120007187-120006895)
               

               
               2-292, gnl|loxAfr1|scaffold_1309 (88942-89218)
               

               
               2-292, gnl|mm7|chr15 (54313150-54313421)
               

               
               2-292, gnl|Mm7|chr15 (54313446-54313168)
               

               
               2-292, gnl|monDom2|scaffold_3 (37161549-37161296)
               

               
               2-292, gnl|oryCun1|scaffold_200461 (60843-61118)
               

               
               2-292, gnl|panTro1|chr7 (122769339-122769611)
               

               
               2-292, gnl|rheMac2|chr8 (121446876-121447151)
               

               
               2-292, gnl|rn3|chr7 (90643200-90643470)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-292, gnl|bosTau2|chr14 (25999358-25999078)
               

               
               2-292, gnl|canFam2|chr13 (21190412-21190703)
               

               
               2-292, gnl|dasNov1|scaffold_152620 (3832-4095)
               

               
               2-292, gnl|echTel1|scaffold_314311 (36187-35913)
               

               
               2-292, gnl|hg17|chr8 (120006882-120007154)
               

               
               2-292, gnl|Hg17|chr8 (120007187-120006895)
               

               
               2-292, gnl|loxAfr1|scaffold_1309 (88942-89218)
               

               
               2-292, gnl|mm7|chr15 (54313150-54313421)
               

               
               2-292, gnl|Mm7|chr15 (54313446-54313168)
               

               
               2-292, gnl|monDom2|scaffold_3 (37161549-37161296)
               

               
               2-292, gnl|oryCun1|scaffold_200461 (60843-61118)
               

               
               2-292, gnl|panTro1|chr7 (122769339-122769611)
               

               
               2-292, gnl|rheMac2|chr8 (121446876-121447151)
               

               
               2-292, gnl|rn3|chr7 (90643200-90643470)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	2-292, gnl\|bosTau2\|chr14 (25999358-25999078)
	2-292, gnl\|canFam2\|chr13 (21190412-21190703)
	2-292, gnl\|dasNov1\|scaffold_152620 (3832-4095)
	2-292, gnl\|echTel1\|scaffold_314311 (36187-35913)
	2-292, gnl\|hg17\|chr8 (120006882-120007154)
	2-292, gnl\|Hg17\|chr8 (120007187-120006895)
	2-292, gnl\|loxAfr1\|scaffold_1309 (88942-89218)
	2-292, gnl\|mm7\|chr15 (54313150-54313421)
	2-292, gnl\|Mm7\|chr15 (54313446-54313168)
	2-292, gnl\|monDom2\|scaffold_3 (37161549-37161296)
	2-292, gnl\|oryCun1\|scaffold_200461 (60843-61118)
	2-292, gnl\|panTro1\|chr7 (122769339-122769611)
	2-292, gnl\|rheMac2\|chr8 (121446876-121447151)
	2-292, gnl\|rn3\|chr7 (90643200-90643470)