Non-Coding RNA Search

rpfco0124_j5.y1

Sequence:


               
               TACTTTAATTGGGGCCTACGTACAAAATTTTATGGTAGTCTAGGTATGCTGTCAGCTTTT
AAATTGATGTTATATGTCAAAACTGTAGTGAAGACTTTAAATTAAAAGCTTCATCTCGGA
ATGCTAGAGTTTCCATGGTTATAACTGATCAGTATAGCCCTTTTTGAAAATTATGCTTTA
TGTAATGATGTCAAAAACTTGCCTCACTCTCTTTCCCAGCAGTAGGAAATTGTCATTCAT
TTCTTTAATTTCAGCTTCATGAGTCAGAAACCCTTCTAAATTGATTTAGGATTTTGACTT
CATGACATACATGTATCTAAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTAATTGGGGCCTACGTACAAAATTTTATGGTAGTCTAGGTATGCTGTCAGCTTTT
AAATTGATGTTATATGTCAAAACTGTAGTGAAGACTTTAAATTAAAAGCTTCATCTCGGA
ATGCTAGAGTTTCCATGGTTATAACTGATCAGTATAGCCCTTTTTGAAAATTATGCTTTA
TGTAATGATGTCAAAAACTTGCCTCACTCTCTTTCCCAGCAGTAGGAAATTGTCATTCAT
TTCTTTAATTTCAGCTTCATGAGTCAGAAACCCTTCTAAATTGATTTAGGATTTTGACTT
CATGACATACATGTATCTAAGTGAG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-325, gnl|bosTau2|chr20 (19880382-19880051)
               

               
               1-325, gnl|canFam2|chr4 (71850454-71849805)
               

               
               1-325, gnl|hg17|chr5 (40748970-40749618)
               

               
               1-325, gnl|Hg17|chr5 (40749365-40749037)
               

               
               1-325, gnl|mm7|chr15 (5045750-5045144)
               

               
               1-325, gnl|Mm7|chr15 (5045376-5045695)
               

               
               1-325, gnl|oryCun1|scaffold_201769 (117092-117714)
               

               
               1-325, gnl|rheMac2|chr6 (40552744-40553393)
               

               
               1-325, gnl|rn3|chr2 (54340585-54339982)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr20 (19880382-19880051)
               

               
               1-325, gnl|canFam2|chr4 (71850454-71849805)
               

               
               1-325, gnl|hg17|chr5 (40748970-40749618)
               

               
               1-325, gnl|Hg17|chr5 (40749365-40749037)
               

               
               1-325, gnl|mm7|chr15 (5045750-5045144)
               

               
               1-325, gnl|Mm7|chr15 (5045376-5045695)
               

               
               1-325, gnl|oryCun1|scaffold_201769 (117092-117714)
               

               
               1-325, gnl|rheMac2|chr6 (40552744-40553393)
               

               
               1-325, gnl|rn3|chr2 (54340585-54339982)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-325, gnl\|bosTau2\|chr20 (19880382-19880051)
	1-325, gnl\|canFam2\|chr4 (71850454-71849805)
	1-325, gnl\|hg17\|chr5 (40748970-40749618)
	1-325, gnl\|Hg17\|chr5 (40749365-40749037)
	1-325, gnl\|mm7\|chr15 (5045750-5045144)
	1-325, gnl\|Mm7\|chr15 (5045376-5045695)
	1-325, gnl\|oryCun1\|scaffold_201769 (117092-117714)
	1-325, gnl\|rheMac2\|chr6 (40552744-40553393)
	1-325, gnl\|rn3\|chr2 (54340585-54339982)