Non-Coding RNA Search

rpfco0127_k6.y1

Sequence:


               
               ATGGCTTTTTGTAATTGTCAAGGAAAGACTGGGAACCAACAGTCTTTAAAAAGTGTGTAT
TTTAGTATGGAAATGATAACAAATGTGCTTTCTCTGCTTGTGATTATTTTTGATTATGTT
ATCCTTTTGATAATATTAATGTATTCTTTATTATAAAATGTTAATATCCTATTTAGCAGG
TATGTTTGTGTTTGGTATTTTCATATATATTATCTGACTTTTAATTATGCATTATATATA
ATGTCAATAATATTTAGCATTAATTATAAATTTTTATTTTTAATGTATATTGACTAAAGT
CACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCTTTTTGTAATTGTCAAGGAAAGACTGGGAACCAACAGTCTTTAAAAAGTGTGTAT
TTTAGTATGGAAATGATAACAAATGTGCTTTCTCTGCTTGTGATTATTTTTGATTATGTT
ATCCTTTTGATAATATTAATGTATTCTTTATTATAAAATGTTAATATCCTATTTAGCAGG
TATGTTTGTGTTTGGTATTTTCATATATATTATCTGACTTTTAATTATGCATTATATATA
ATGTCAATAATATTTAGCATTAATTATAAATTTTTATTTTTAATGTATATTGACTAAAGT
CACAAT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-306, gnl|bosTau2|chr10 (32448822-32448502)
               

               
               1-306, gnl|canFam2|chr30 (29603834-29604162)
               

               
               1-306, gnl|dasNov1|scaffold_88988 (1905-2239)
               

               
               1-306, gnl|echTel1|scaffold_291679 (39258-39492)
               

               
               1-306, gnl|hg17|chr15 (59943785-59944110)
               

               
               1-306, gnl|Hg17|chr15 (59944163-59943847)
               

               
               1-306, gnl|loxAfr1|scaffold_6347 (34823-34481)
               

               
               1-306, gnl|mm7|chr9 (68017884-68017526)
               

               
               1-306, gnl|Mm7|chr9 (68017476-68017823)
               

               
               1-306, gnl|monDom2|scaffold_12 (52327710-52327384)
               

               
               1-306, gnl|oryCun1|scaffold_174591 (47522-47177)
               

               
               1-306, gnl|panTro1|chr16 (60390335-60390662)
               

               
               1-306, gnl|rheMac2|chr7 (40275597-40275920)
               

               
               1-306, gnl|rn3|chr8 (72376671-72376320)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-306, gnl|bosTau2|chr10 (32448822-32448502)
               

               
               1-306, gnl|canFam2|chr30 (29603834-29604162)
               

               
               1-306, gnl|dasNov1|scaffold_88988 (1905-2239)
               

               
               1-306, gnl|echTel1|scaffold_291679 (39258-39492)
               

               
               1-306, gnl|hg17|chr15 (59943785-59944110)
               

               
               1-306, gnl|Hg17|chr15 (59944163-59943847)
               

               
               1-306, gnl|loxAfr1|scaffold_6347 (34823-34481)
               

               
               1-306, gnl|mm7|chr9 (68017884-68017526)
               

               
               1-306, gnl|Mm7|chr9 (68017476-68017823)
               

               
               1-306, gnl|monDom2|scaffold_12 (52327710-52327384)
               

               
               1-306, gnl|oryCun1|scaffold_174591 (47522-47177)
               

               
               1-306, gnl|panTro1|chr16 (60390335-60390662)
               

               
               1-306, gnl|rheMac2|chr7 (40275597-40275920)
               

               
               1-306, gnl|rn3|chr8 (72376671-72376320)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-306, gnl\|bosTau2\|chr10 (32448822-32448502)
	1-306, gnl\|canFam2\|chr30 (29603834-29604162)
	1-306, gnl\|dasNov1\|scaffold_88988 (1905-2239)
	1-306, gnl\|echTel1\|scaffold_291679 (39258-39492)
	1-306, gnl\|hg17\|chr15 (59943785-59944110)
	1-306, gnl\|Hg17\|chr15 (59944163-59943847)
	1-306, gnl\|loxAfr1\|scaffold_6347 (34823-34481)
	1-306, gnl\|mm7\|chr9 (68017884-68017526)
	1-306, gnl\|Mm7\|chr9 (68017476-68017823)
	1-306, gnl\|monDom2\|scaffold_12 (52327710-52327384)
	1-306, gnl\|oryCun1\|scaffold_174591 (47522-47177)
	1-306, gnl\|panTro1\|chr16 (60390335-60390662)
	1-306, gnl\|rheMac2\|chr7 (40275597-40275920)
	1-306, gnl\|rn3\|chr8 (72376671-72376320)