Non-Coding RNA Search

rpfco0129_g1.y1

Sequence:


               
               CAGAGAAGGAAAATATCATCGAAATAAGGAAAATTCTCATTTATTAGTGTGCAGACTCCT
ATTTGTTTTGAATATTGGCTATTGCCTAGAAAATAAGTAAATCTTGTAACTAATCAAATC
TGAGCAAGATTTTTATCTATAGGAACAAATACATCTATGTTTTAGACTATGTTCAACAAC
ATGCAGTCATAGGATATGTATATGATACCACACAATACTCAAATACACACACTTGGTTAC
ATAAATACACATAGGAACTAGAAAATTAAAGGATTCACCAAATACATCTCTCCAGAATTA
AGGTCACTGATACTGAAATAAATATTATTTGATTAAGATGGATGTTAAAACCTGAGAATC
TTTGTCCAAATGTTCATGAACATATTTATGCATATGATAATTAGCTCATCATCTAGTGTC
ATTATAAATACATTTCATATGCGGTAATGTATCTGTCAATAATTAGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAAGGAAAATATCATCGAAATAAGGAAAATTCTCATTTATTAGTGTGCAGACTCCT
ATTTGTTTTGAATATTGGCTATTGCCTAGAAAATAAGTAAATCTTGTAACTAATCAAATC
TGAGCAAGATTTTTATCTATAGGAACAAATACATCTATGTTTTAGACTATGTTCAACAAC
ATGCAGTCATAGGATATGTATATGATACCACACAATACTCAAATACACACACTTGGTTAC
ATAAATACACATAGGAACTAGAAAATTAAAGGATTCACCAAATACATCTCTCCAGAATTA
AGGTCACTGATACTGAAATAAATATTATTTGATTAAGATGGATGTTAAAACCTGAGAATC
TTTGTCCAAATGTTCATGAACATATTTATGCATATGATAATTAGCTCATCATCTAGTGTC
ATTATAAATACATTTCATATGCGGTAATGTATCTGTCAATAATTAGTGCC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-469, gnl|bosTau2|chr3 (64466983-64467449)
               

               
               3-469, gnl|canFam2|chr22 (42328131-42328535)
               

               
               3-469, gnl|dasNov1|scaffold_22338 (42729-42305)
               

               
               3-469, gnl|hg17|chr13 (87119216-87119627)
               

               
               3-469, gnl|Hg17|chr13 (87119747-87119269)
               

               
               3-469, gnl|loxAfr1|scaffold_30076 (4636-4229)
               

               
               3-469, gnl|mm7|chr14 (106075747-106076111)
               

               
               3-469, gnl|Mm7|chr14 (106076231-106075802)
               

               
               3-469, gnl|monDom2|scaffold_11 (68915882-68915468)
               

               
               3-469, gnl|oryCun1|scaffold_65629 (756-384)
               

               
               3-469, gnl|panTro1|chr14 (69864342-69864776)
               

               
               3-469, gnl|rheMac2|chr17 (68044745-68045179)
               

               
               3-469, gnl|rn3|chr15 (96417119-96417482)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-469, gnl|bosTau2|chr3 (64466983-64467449)
               

               
               3-469, gnl|canFam2|chr22 (42328131-42328535)
               

               
               3-469, gnl|dasNov1|scaffold_22338 (42729-42305)
               

               
               3-469, gnl|hg17|chr13 (87119216-87119627)
               

               
               3-469, gnl|Hg17|chr13 (87119747-87119269)
               

               
               3-469, gnl|loxAfr1|scaffold_30076 (4636-4229)
               

               
               3-469, gnl|mm7|chr14 (106075747-106076111)
               

               
               3-469, gnl|Mm7|chr14 (106076231-106075802)
               

               
               3-469, gnl|monDom2|scaffold_11 (68915882-68915468)
               

               
               3-469, gnl|oryCun1|scaffold_65629 (756-384)
               

               
               3-469, gnl|panTro1|chr14 (69864342-69864776)
               

               
               3-469, gnl|rheMac2|chr17 (68044745-68045179)
               

               
               3-469, gnl|rn3|chr15 (96417119-96417482)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	3-469, gnl\|bosTau2\|chr3 (64466983-64467449)
	3-469, gnl\|canFam2\|chr22 (42328131-42328535)
	3-469, gnl\|dasNov1\|scaffold_22338 (42729-42305)
	3-469, gnl\|hg17\|chr13 (87119216-87119627)
	3-469, gnl\|Hg17\|chr13 (87119747-87119269)
	3-469, gnl\|loxAfr1\|scaffold_30076 (4636-4229)
	3-469, gnl\|mm7\|chr14 (106075747-106076111)
	3-469, gnl\|Mm7\|chr14 (106076231-106075802)
	3-469, gnl\|monDom2\|scaffold_11 (68915882-68915468)
	3-469, gnl\|oryCun1\|scaffold_65629 (756-384)
	3-469, gnl\|panTro1\|chr14 (69864342-69864776)
	3-469, gnl\|rheMac2\|chr17 (68044745-68045179)
	3-469, gnl\|rn3\|chr15 (96417119-96417482)