Non-Coding RNA Search

rpfco0134_k9.y1

Sequence:


               
               GCTTTTTAAATAAAATCTTTATTATAAACCATGACTATTTCTAAGGCCATTCATCATTTT
CTCTCTTGATTCTTTGTGGACTGCATTTCATAGGAGTAAAATTGTAACCTCCTATCCTCT
GACAAATATTATGGGTTGTCATTTATTTGTTTAGTTTTCATAAGAAGGCCTTAGTTCTTT
CATGGGGAGACAACTAGGTTCCTGATAGGCAAGCAACAGATTTATTTGTGTTGGAAAAGC
TGGAAGAGGGGGATATTCAATCATATTGTTACCTTAATAAGGAAAATAAAAGAAGTCAGT
TGTTCTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTTTAAATAAAATCTTTATTATAAACCATGACTATTTCTAAGGCCATTCATCATTTT
CTCTCTTGATTCTTTGTGGACTGCATTTCATAGGAGTAAAATTGTAACCTCCTATCCTCT
GACAAATATTATGGGTTGTCATTTATTTGTTTAGTTTTCATAAGAAGGCCTTAGTTCTTT
CATGGGGAGACAACTAGGTTCCTGATAGGCAAGCAACAGATTTATTTGTGTTGGAAAAGC
TGGAAGAGGGGGATATTCAATCATATTGTTACCTTAATAAGGAAAATAAAAGAAGTCAGT
TGTTCTAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-306, gnl|bosTau2|chr12 (40613401-40613719)
               

               
               1-306, gnl|canFam2|chr22 (39272740-39273065)
               

               
               1-306, gnl|dasNov1|scaffold_1864 (121705-122052)
               

               
               1-306, gnl|echTel1|scaffold_251888 (3567-3875)
               

               
               1-306, gnl|hg17|chr13 (83349059-83349391)
               

               
               1-306, gnl|Hg17|chr13 (83349374-83349054)
               

               
               1-306, gnl|loxAfr1|scaffold_60022 (11772-11439)
               

               
               1-306, gnl|mm7|chr14 (103307057-103307393)
               

               
               1-306, gnl|Mm7|chr14 (103307376-103307062)
               

               
               1-306, gnl|monDom2|scaffold_11 (76002460-76002145)
               

               
               1-306, gnl|panTro1|chr14 (66057652-66057984)
               

               
               1-306, gnl|rheMac2|chr17 (64387141-64387473)
               

               
               1-306, gnl|rn3|chr15 (93220367-93220696)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-306, gnl|bosTau2|chr12 (40613401-40613719)
               

               
               1-306, gnl|canFam2|chr22 (39272740-39273065)
               

               
               1-306, gnl|dasNov1|scaffold_1864 (121705-122052)
               

               
               1-306, gnl|echTel1|scaffold_251888 (3567-3875)
               

               
               1-306, gnl|hg17|chr13 (83349059-83349391)
               

               
               1-306, gnl|Hg17|chr13 (83349374-83349054)
               

               
               1-306, gnl|loxAfr1|scaffold_60022 (11772-11439)
               

               
               1-306, gnl|mm7|chr14 (103307057-103307393)
               

               
               1-306, gnl|Mm7|chr14 (103307376-103307062)
               

               
               1-306, gnl|monDom2|scaffold_11 (76002460-76002145)
               

               
               1-306, gnl|panTro1|chr14 (66057652-66057984)
               

               
               1-306, gnl|rheMac2|chr17 (64387141-64387473)
               

               
               1-306, gnl|rn3|chr15 (93220367-93220696)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-306, gnl\|bosTau2\|chr12 (40613401-40613719)
	1-306, gnl\|canFam2\|chr22 (39272740-39273065)
	1-306, gnl\|dasNov1\|scaffold_1864 (121705-122052)
	1-306, gnl\|echTel1\|scaffold_251888 (3567-3875)
	1-306, gnl\|hg17\|chr13 (83349059-83349391)
	1-306, gnl\|Hg17\|chr13 (83349374-83349054)
	1-306, gnl\|loxAfr1\|scaffold_60022 (11772-11439)
	1-306, gnl\|mm7\|chr14 (103307057-103307393)
	1-306, gnl\|Mm7\|chr14 (103307376-103307062)
	1-306, gnl\|monDom2\|scaffold_11 (76002460-76002145)
	1-306, gnl\|panTro1\|chr14 (66057652-66057984)
	1-306, gnl\|rheMac2\|chr17 (64387141-64387473)
	1-306, gnl\|rn3\|chr15 (93220367-93220696)