Non-Coding RNA Search

rpfco0134_o14.y1

Sequence:


               
               TATCTACAGTTTTAAGTTGAATAAACTAGTAAGAAATTTGATTAATACTACTTATTTTAA
ATGTTCATATTACCAATTTAAGCTAATTTTTGTACTGAAGCAATAAGGTAATTTAATGTG
ATATTAGATTTTCAAAACTTCAACTTTTTGTGTCAAATATTAATTATGATACTTTAAAGT
ATTTTTATAGAATAAGATGTTTTATAGAGTAAAATATTTTATAGAATAGGTATTTTACAA
GATAAAGTCAATTGTGCTTTATTGATAGTATTCTGAACATATTTTGTTGGAGAATTATAT
ACTCAACAATCACATACTCATGTCTCAGAATCTAAGATTATGCTTATTAATTCTATCTAT
TGATTAATTAATATTCCAATGGGTAAGTTTTGACACTTTAAATTTTATATCCAGAGATCA
AATGTATTAAAACTGTAAAACATCTTGTATACCAATCTTAAAAATTATCTTCTAGTTTTT
GCCATACTTGTATCTAGATGCCTCATGCTCAGGTGAATATCCTGCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTACAGTTTTAAGTTGAATAAACTAGTAAGAAATTTGATTAATACTACTTATTTTAA
ATGTTCATATTACCAATTTAAGCTAATTTTTGTACTGAAGCAATAAGGTAATTTAATGTG
ATATTAGATTTTCAAAACTTCAACTTTTTGTGTCAAATATTAATTATGATACTTTAAAGT
ATTTTTATAGAATAAGATGTTTTATAGAGTAAAATATTTTATAGAATAGGTATTTTACAA
GATAAAGTCAATTGTGCTTTATTGATAGTATTCTGAACATATTTTGTTGGAGAATTATAT
ACTCAACAATCACATACTCATGTCTCAGAATCTAAGATTATGCTTATTAATTCTATCTAT
TGATTAATTAATATTCCAATGGGTAAGTTTTGACACTTTAAATTTTATATCCAGAGATCA
AATGTATTAAAACTGTAAAACATCTTGTATACCAATCTTAAAAATTATCTTCTAGTTTTT
GCCATACTTGTATCTAGATGCCTCATGCTCAGGTGAATATCCTGCTTTTA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               50-333, gnl|bosTau2|chr23 (19547252-19546959)
               

               
               50-333, gnl|canFam2|chr12 (20721889-20722126)
               

               
               50-333, gnl|hg17|chr6 (49988680-49988944)
               

               
               50-333, gnl|Hg17|chr6 (49988679-49988962)
               

               
               50-333, gnl|panTro1|chr5 (50785793-50786058)
               

               
               50-333, gnl|rheMac2|chr4 (49634709-49634977)
               


               
               346-529, gnl|bosTau2|chr23 (19546712-19546532)
               

               
               346-529, gnl|canFam2|chr12 (20722179-20722347)
               

               
               346-529, gnl|hg17|chr6 (49989000-49989199)
               

               
               346-529, gnl|panTro1|chr5 (50786114-50786307)
               

               
               346-529, gnl|rheMac2|chr4 (49635033-49635229)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-333, gnl|bosTau2|chr23 (19547252-19546959)
               

               
               50-333, gnl|canFam2|chr12 (20721889-20722126)
               

               
               50-333, gnl|hg17|chr6 (49988680-49988944)
               

               
               50-333, gnl|Hg17|chr6 (49988679-49988962)
               

               
               50-333, gnl|panTro1|chr5 (50785793-50786058)
               

               
               50-333, gnl|rheMac2|chr4 (49634709-49634977)
               


               
               346-529, gnl|bosTau2|chr23 (19546712-19546532)
               

               
               346-529, gnl|canFam2|chr12 (20722179-20722347)
               

               
               346-529, gnl|hg17|chr6 (49989000-49989199)
               

               
               346-529, gnl|panTro1|chr5 (50786114-50786307)
               

               
               346-529, gnl|rheMac2|chr4 (49635033-49635229)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	50-333, gnl\|bosTau2\|chr23 (19547252-19546959)
	50-333, gnl\|canFam2\|chr12 (20721889-20722126)
	50-333, gnl\|hg17\|chr6 (49988680-49988944)
	50-333, gnl\|Hg17\|chr6 (49988679-49988962)
	50-333, gnl\|panTro1\|chr5 (50785793-50786058)
	50-333, gnl\|rheMac2\|chr4 (49634709-49634977)

	346-529, gnl\|bosTau2\|chr23 (19546712-19546532)
	346-529, gnl\|canFam2\|chr12 (20722179-20722347)
	346-529, gnl\|hg17\|chr6 (49989000-49989199)
	346-529, gnl\|panTro1\|chr5 (50786114-50786307)
	346-529, gnl\|rheMac2\|chr4 (49635033-49635229)