Non-Coding RNA Search

rpfco0135_g22.y1

Sequence:


               
               GGCAGCTGTGGTCCTGGGGTGGCAATGGCCGCCAGCAACCAGAGACATGCGGTCACAACC
AGTACTTCGATATCTCCGCGCTCTCCTGTGTGCCGTGTGGAGCTAACCAGATGCAGGATG
CCGGAGGAACTTCATGTGTGTGTCTACCAGGATTTCAGATGATCTCTAATAATGGAGGAC
CTGATATTATTTGTAAGAAGTGCCCAGAAAGCATGAAAGGTGTTACTGAAGATGGCTGGA
ACTGTATTTCTTGCCCTGATGGCTTAACTGCAGAAGGAAAATGCCACTGTCCTACTGGCC
ATATCTTGGTGGAAAGAGATGTTAATGGAACATTGTTGTCCCAAGCAACTTGTAAGCTCT
GTGATGACAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCTGTGGTCCTGGGGTGGCAATGGCCGCCAGCAACCAGAGACATGCGGTCACAACC
AGTACTTCGATATCTCCGCGCTCTCCTGTGTGCCGTGTGGAGCTAACCAGATGCAGGATG
CCGGAGGAACTTCATGTGTGTGTCTACCAGGATTTCAGATGATCTCTAATAATGGAGGAC
CTGATATTATTTGTAAGAAGTGCCCAGAAAGCATGAAAGGTGTTACTGAAGATGGCTGGA
ACTGTATTTCTTGCCCTGATGGCTTAACTGCAGAAGGAAAATGCCACTGTCCTACTGGCC
ATATCTTGGTGGAAAGAGATGTTAATGGAACATTGTTGTCCCAAGCAACTTGTAAGCTCT
GTGATGACAGTGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26382762|dbj|BAC25507.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26382762|dbj|BAC25507.1|

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               215-320, gnl|bosTau2|chr14 (43707030-43707137)
               

               
               215-320, gnl|canFam2|chr29 (41643633-41643864)
               

               
               215-320, gnl|dasNov1|scaffold_2328 (80507-80723)
               

               
               215-320, gnl|echTel1|scaffold_321231 (34843-34626)
               

               
               215-320, gnl|galGal2|chr2 (125200616-125200831)
               

               
               215-320, gnl|hg17|chr8 (94839815-94840042)
               

               
               215-320, gnl|Hg17|chr8 (94839886-94839993)
               

               
               215-320, gnl|loxAfr1|scaffold_54392 (4584-4815)
               

               
               215-320, gnl|mm7|chr4 (12007190-12006976)
               

               
               215-320, gnl|Mm7|chr4 (12007116-12007009)
               

               
               215-320, gnl|monDom2|scaffold_3 (72057999-72057806)
               

               
               215-320, gnl|panTro1|chr7_random (41467194-41466967)
               

               
               215-320, gnl|rheMac2|chr8 (96333711-96333938)
               

               
               215-320, gnl|rn3|chr5 (26368475-26368271)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-320, gnl|bosTau2|chr14 (43707030-43707137)
               

               
               215-320, gnl|canFam2|chr29 (41643633-41643864)
               

               
               215-320, gnl|dasNov1|scaffold_2328 (80507-80723)
               

               
               215-320, gnl|echTel1|scaffold_321231 (34843-34626)
               

               
               215-320, gnl|galGal2|chr2 (125200616-125200831)
               

               
               215-320, gnl|hg17|chr8 (94839815-94840042)
               

               
               215-320, gnl|Hg17|chr8 (94839886-94839993)
               

               
               215-320, gnl|loxAfr1|scaffold_54392 (4584-4815)
               

               
               215-320, gnl|mm7|chr4 (12007190-12006976)
               

               
               215-320, gnl|Mm7|chr4 (12007116-12007009)
               

               
               215-320, gnl|monDom2|scaffold_3 (72057999-72057806)
               

               
               215-320, gnl|panTro1|chr7_random (41467194-41466967)
               

               
               215-320, gnl|rheMac2|chr8 (96333711-96333938)
               

               
               215-320, gnl|rn3|chr5 (26368475-26368271)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	215-320, gnl\|bosTau2\|chr14 (43707030-43707137)
	215-320, gnl\|canFam2\|chr29 (41643633-41643864)
	215-320, gnl\|dasNov1\|scaffold_2328 (80507-80723)
	215-320, gnl\|echTel1\|scaffold_321231 (34843-34626)
	215-320, gnl\|galGal2\|chr2 (125200616-125200831)
	215-320, gnl\|hg17\|chr8 (94839815-94840042)
	215-320, gnl\|Hg17\|chr8 (94839886-94839993)
	215-320, gnl\|loxAfr1\|scaffold_54392 (4584-4815)
	215-320, gnl\|mm7\|chr4 (12007190-12006976)
	215-320, gnl\|Mm7\|chr4 (12007116-12007009)
	215-320, gnl\|monDom2\|scaffold_3 (72057999-72057806)
	215-320, gnl\|panTro1\|chr7_random (41467194-41466967)
	215-320, gnl\|rheMac2\|chr8 (96333711-96333938)
	215-320, gnl\|rn3\|chr5 (26368475-26368271)