Non-Coding RNA Search

rpfco0140_n12.y1

Sequence:


               
               TGTCTCTGGAGCAGAATGCAGCAAATTGTCACAAATCTTGTTTTCTGAGAAACTGGTTAT
ATCAACATTACAGCATGCCACTTCTTCAGCCAGCATGCCAAAAATAACACGAAAAGAAAT
GACTGCAAATCTAGTTAGAATTAAGCCCATAATTATTGCGTTTGTGATCATTTCCAAGAA
TTGTTCCTAACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTCTGGAGCAGAATGCAGCAAATTGTCACAAATCTTGTTTTCTGAGAAACTGGTTAT
ATCAACATTACAGCATGCCACTTCTTCAGCCAGCATGCCAAAAATAACACGAAAAGAAAT
GACTGCAAATCTAGTTAGAATTAAGCCCATAATTATTGCGTTTGTGATCATTTCCAAGAA
TTGTTCCTAACCAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-195, gnl|bosTau2|chr8 (13966849-13966655)
               

               
               1-195, gnl|canFam2|chr11 (38479458-38480163)
               

               
               1-195, gnl|dasNov1|scaffold_7110 (31654-32358)
               

               
               1-195, gnl|echTel1|scaffold_320510 (65027-64322)
               

               
               1-195, gnl|hg17|chr9 (15145616-15146324)
               

               
               1-195, gnl|Hg17|chr9 (15146070-15145878)
               

               
               1-195, gnl|loxAfr1|scaffold_29614 (8721-8027)
               

               
               1-195, gnl|mm7|chr4 (82618464-82619093)
               

               
               1-195, gnl|Mm7|chr4 (82618839-82618648)
               

               
               1-195, gnl|monDom2|scaffold_5 (99340867-99340138)
               

               
               1-195, gnl|oryCun1|scaffold_195819 (7381-6653)
               

               
               1-195, gnl|panTro1|chr11 (15359384-15360093)
               

               
               1-195, gnl|rheMac2|chr15 (61770485-61769776)
               

               
               1-195, gnl|rn3|chr5 (102059039-102059675)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-195, gnl|bosTau2|chr8 (13966849-13966655)
               

               
               1-195, gnl|canFam2|chr11 (38479458-38480163)
               

               
               1-195, gnl|dasNov1|scaffold_7110 (31654-32358)
               

               
               1-195, gnl|echTel1|scaffold_320510 (65027-64322)
               

               
               1-195, gnl|hg17|chr9 (15145616-15146324)
               

               
               1-195, gnl|Hg17|chr9 (15146070-15145878)
               

               
               1-195, gnl|loxAfr1|scaffold_29614 (8721-8027)
               

               
               1-195, gnl|mm7|chr4 (82618464-82619093)
               

               
               1-195, gnl|Mm7|chr4 (82618839-82618648)
               

               
               1-195, gnl|monDom2|scaffold_5 (99340867-99340138)
               

               
               1-195, gnl|oryCun1|scaffold_195819 (7381-6653)
               

               
               1-195, gnl|panTro1|chr11 (15359384-15360093)
               

               
               1-195, gnl|rheMac2|chr15 (61770485-61769776)
               

               
               1-195, gnl|rn3|chr5 (102059039-102059675)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fco (0.157208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)

	1-195, gnl\|bosTau2\|chr8 (13966849-13966655)
	1-195, gnl\|canFam2\|chr11 (38479458-38480163)
	1-195, gnl\|dasNov1\|scaffold_7110 (31654-32358)
	1-195, gnl\|echTel1\|scaffold_320510 (65027-64322)
	1-195, gnl\|hg17\|chr9 (15145616-15146324)
	1-195, gnl\|Hg17\|chr9 (15146070-15145878)
	1-195, gnl\|loxAfr1\|scaffold_29614 (8721-8027)
	1-195, gnl\|mm7\|chr4 (82618464-82619093)
	1-195, gnl\|Mm7\|chr4 (82618839-82618648)
	1-195, gnl\|monDom2\|scaffold_5 (99340867-99340138)
	1-195, gnl\|oryCun1\|scaffold_195819 (7381-6653)
	1-195, gnl\|panTro1\|chr11 (15359384-15360093)
	1-195, gnl\|rheMac2\|chr15 (61770485-61769776)
	1-195, gnl\|rn3\|chr5 (102059039-102059675)