Non-Coding RNA Search

rpgl01_i18.y1

Sequence:


               
               ACGGCTCCTGGACAGATATGGACACACCCAGCCGCTGTGTCCGAATCTGCTCCAAGTCTT
ACTTGACCCTGGAAAATGGGAAGGTTTTCCTGACGGGTGGGGACCTCCCAGCTCTGGACG
GAGCCCGGGTGGATTTCCGGTGTGACCCCGACTTCCATCTGGTGGGCAGCTCCCGGACCA
TCTGTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGGGTGAGGGGAACAGCT
GCGTGCATGCAGCTGATGAGGATGCTTGTCAGAGGATGGGAGTGGGGTGGGAATGGCTGG
TGGGGAAAAGCAGGGTGCTGTACAAAGTGGGGGACTTTGGGGAGGCAAAGGCCCAAAAAA
GGCCCAACCTTTTCCTCCATTCTCCCTGCCTCAAACTTCCTCCTGCAGTCCCCCGTTACC
ACTTTACCTCTGTTGGGGGCTTCTTTACTTTTCTCTTTTTAATATCTTCCCCCACATTTT
CTCCTTTCCTTTATGAACCTCACTGTCCACCACCCTTCTTAAGGTTTTACATACTCAAGT
TTTCTCAGCCTCAGTTCCTTTCTCAACACTTAGAACTTTCTATGCATCACCTTCTGGAAT
CGATCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCTCCTGGACAGATATGGACACACCCAGCCGCTGTGTCCGAATCTGCTCCAAGTCTT
ACTTGACCCTGGAAAATGGGAAGGTTTTCCTGACGGGTGGGGACCTCCCAGCTCTGGACG
GAGCCCGGGTGGATTTCCGGTGTGACCCCGACTTCCATCTGGTGGGCAGCTCCCGGACCA
TCTGTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGGGTGAGGGGAACAGCT
GCGTGCATGCAGCTGATGAGGATGCTTGTCAGAGGATGGGAGTGGGGTGGGAATGGCTGG
TGGGGAAAAGCAGGGTGCTGTACAAAGTGGGGGACTTTGGGGAGGCAAAGGCCCAAAAAA
GGCCCAACCTTTTCCTCCATTCTCCCTGCCTCAAACTTCCTCCTGCAGTCCCCCGTTACC
ACTTTACCTCTGTTGGGGGCTTCTTTACTTTTCTCTTTTTAATATCTTCCCCCACATTTT
CTCCTTTCCTTTATGAACCTCACTGTCCACCACCCTTCTTAAGGTTTTACATACTCAAGT
TTTCTCAGCCTCAGTTCCTTTCTCAACACTTAGAACTTTCTATGCATCACCTTCTGGAAT
CGATCCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56553734|pdb|1SS2|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56553734|pdb|1SS2|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-397, + strand, RNAz p=0.999006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-397, + strand, RNAz p=0.999006

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               39-472, gnl|bosTau2|chr23 (24058596-24059006)
               

               
               39-472, gnl|Hg17|chr6 (29706400-29705978)
               

               
               39-472, gnl|Mm7|chr17 (35199960-35200374)
               


               
               473-609, gnl|bosTau2|chr23 (24059028-24059167)
               

               
               473-609, gnl|canFam2|chr35 (29253935-29254201)
               

               
               473-609, gnl|dasNov1|scaffold_250053 (3179-3420)
               

               
               473-609, gnl|hg17|chr6 (29705671-29705906)
               

               
               473-609, gnl|Hg17|chr6 (29705957-29705833)
               

               
               473-609, gnl|mm7|chr17 (35200702-35200451)
               

               
               473-609, gnl|Mm7|chr17 (35200396-35200551)
               

               
               473-609, gnl|monDom2|scaffold_42 (19279758-19279518)
               

               
               473-609, gnl|panTro1|chr5 (30216345-30216580)
               

               
               473-609, gnl|rheMac2|chr4 (29366863-29367099)
               

               
               473-609, gnl|rn3|chr20 (1579369-1579622)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-472, gnl|bosTau2|chr23 (24058596-24059006)
               

               
               39-472, gnl|Hg17|chr6 (29706400-29705978)
               

               
               39-472, gnl|Mm7|chr17 (35199960-35200374)
               


               
               473-609, gnl|bosTau2|chr23 (24059028-24059167)
               

               
               473-609, gnl|canFam2|chr35 (29253935-29254201)
               

               
               473-609, gnl|dasNov1|scaffold_250053 (3179-3420)
               

               
               473-609, gnl|hg17|chr6 (29705671-29705906)
               

               
               473-609, gnl|Hg17|chr6 (29705957-29705833)
               

               
               473-609, gnl|mm7|chr17 (35200702-35200451)
               

               
               473-609, gnl|Mm7|chr17 (35200396-35200551)
               

               
               473-609, gnl|monDom2|scaffold_42 (19279758-19279518)
               

               
               473-609, gnl|panTro1|chr5 (30216345-30216580)
               

               
               473-609, gnl|rheMac2|chr4 (29366863-29367099)
               

               
               473-609, gnl|rn3|chr20 (1579369-1579622)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	39-472, gnl\|bosTau2\|chr23 (24058596-24059006)
	39-472, gnl\|Hg17\|chr6 (29706400-29705978)
	39-472, gnl\|Mm7\|chr17 (35199960-35200374)

	473-609, gnl\|bosTau2\|chr23 (24059028-24059167)
	473-609, gnl\|canFam2\|chr35 (29253935-29254201)
	473-609, gnl\|dasNov1\|scaffold_250053 (3179-3420)
	473-609, gnl\|hg17\|chr6 (29705671-29705906)
	473-609, gnl\|Hg17\|chr6 (29705957-29705833)
	473-609, gnl\|mm7\|chr17 (35200702-35200451)
	473-609, gnl\|Mm7\|chr17 (35200396-35200551)
	473-609, gnl\|monDom2\|scaffold_42 (19279758-19279518)
	473-609, gnl\|panTro1\|chr5 (30216345-30216580)
	473-609, gnl\|rheMac2\|chr4 (29366863-29367099)
	473-609, gnl\|rn3\|chr20 (1579369-1579622)