Non-Coding RNA Search

rpgl01_i24.y1

Sequence:


               
               CGCAAGACAAGCTAATATCCCTCTTCAGGTCCACAATCAACTGCCCTTGAACACATCCTG
CAAAAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGCTGTCATCCT
GGCCATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGAGTTTACAAT
GCAGGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCTGGGTGCCCC
AATCTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGCGAGGTCCAA
GAAGACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGTGGCCAAAGC
ATTTACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGAATGCCACTG
CAGTACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTGATGACTGCT
GATTTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGATAAAATCCT
CGCTTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAAGACAAGCTAATATCCCTCTTCAGGTCCACAATCAACTGCCCTTGAACACATCCTG
CAAAAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGCTGTCATCCT
GGCCATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGAGTTTACAAT
GCAGGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCTGGGTGCCCC
AATCTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGCGAGGTCCAA
GAAGACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGTGGCCAAAGC
ATTTACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGAATGCCACTG
CAGTACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTGATGACTGCT
GATTTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGATAAAATCCT
CGCTTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|217699|dbj|BAA00664.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|217699|dbj|BAA00664.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-186, + strand, RNAz p=0.709213
               

               
               80-186, - strand, RNAz p=0.770081

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-186, + strand, RNAz p=0.709213
               

               
               80-186, - strand, RNAz p=0.770081

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_000735, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000735, +

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               77-186, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               77-186, gnl|canFam2|chr12 (49613806-49614054)
               

               
               77-186, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               77-186, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               77-186, gnl|galGal2|chr3 (74941271-74940984)
               

               
               77-186, gnl|hg17|chr6 (87854417-87854661)
               

               
               77-186, gnl|Hg17|chr6 (87854646-87854549)
               

               
               77-186, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               77-186, gnl|mm7|chr4 (35042915-35042665)
               

               
               77-186, gnl|Mm7|chr4 (35042677-35042786)
               

               
               77-186, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               77-186, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               77-186, gnl|panTro1|chr5 (89558008-89558252)
               

               
               77-186, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               77-186, gnl|rn3|chr5 (51547978-51547724)
               

               
               77-186, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               369-592, gnl|bosTau2|chr9 (35161493-35161714)
               

               
               369-592, gnl|Hg17|chr6 (87852272-87852051)
               

               
               369-592, gnl|Mm7|chr4 (35045743-35045940)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-186, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               77-186, gnl|canFam2|chr12 (49613806-49614054)
               

               
               77-186, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               77-186, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               77-186, gnl|galGal2|chr3 (74941271-74940984)
               

               
               77-186, gnl|hg17|chr6 (87854417-87854661)
               

               
               77-186, gnl|Hg17|chr6 (87854646-87854549)
               

               
               77-186, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               77-186, gnl|mm7|chr4 (35042915-35042665)
               

               
               77-186, gnl|Mm7|chr4 (35042677-35042786)
               

               
               77-186, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               77-186, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               77-186, gnl|panTro1|chr5 (89558008-89558252)
               

               
               77-186, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               77-186, gnl|rn3|chr5 (51547978-51547724)
               

               
               77-186, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               369-592, gnl|bosTau2|chr9 (35161493-35161714)
               

               
               369-592, gnl|Hg17|chr6 (87852272-87852051)
               

               
               369-592, gnl|Mm7|chr4 (35045743-35045940)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	77-186, + strand, RNAz p=0.709213
	80-186, - strand, RNAz p=0.770081

	77-186, gnl\|bosTau2\|chr9 (35159479-35159588)
	77-186, gnl\|canFam2\|chr12 (49613806-49614054)
	77-186, gnl\|dasNov1\|scaffold_13540 (18702-18448)
	77-186, gnl\|echTel1\|scaffold_314385 (36768-37022)
	77-186, gnl\|galGal2\|chr3 (74941271-74940984)
	77-186, gnl\|hg17\|chr6 (87854417-87854661)
	77-186, gnl\|Hg17\|chr6 (87854646-87854549)
	77-186, gnl\|loxAfr1\|scaffold_12882 (14626-14873)
	77-186, gnl\|mm7\|chr4 (35042915-35042665)
	77-186, gnl\|Mm7\|chr4 (35042677-35042786)
	77-186, gnl\|monDom2\|scaffold_0 (142157677-142157424)
	77-186, gnl\|oryCun1\|scaffold_198549 (4444-4688)
	77-186, gnl\|panTro1\|chr5 (89558008-89558252)
	77-186, gnl\|rheMac2\|chr4 (83036153-83036407)
	77-186, gnl\|rn3\|chr5 (51547978-51547724)
	77-186, gnl\|xenTro1\|scaffold_73 (1023414-1023201)

	369-592, gnl\|bosTau2\|chr9 (35161493-35161714)
	369-592, gnl\|Hg17\|chr6 (87852272-87852051)
	369-592, gnl\|Mm7\|chr4 (35045743-35045940)