Non-Coding RNA Search

rpgl02_h6.y1

Sequence:


               
               GAGCATGCAGTGCCTTGAAATGTAGGCCCAGGAACCAGACTCTCCCCTGAGAGCAGCGGG
AAGCTAACACATGGAGCATGCAGGGAAGTGACTTGTGGATGTCACCGTCATAAGGTCATT
GATCACAGCAGGACATGGACAAGGTTTGCAGAGCAGCAGTCTGGAGGCAGGGAGGCTGGT
GAGGAGGCCGTCGAGGGTACCCAGCAGGGAGGTGATGGGGGCCAGCATGAAATCATGGAA
CGGGCAGCTCGGTGGCAGACAAGGCAGCTCCTGTCCATTTGAGGGACATCTGTGGACCCT
CTCGCCACCCCCTTCGGGGGGCAAAACCTCAGCAGAACAAGACTGACCAGAATGCAAAGG
ATCCTGATCCCAgagttcccgttgtggctcaatggaaacaaatctgagtagtatccatga
ggatgcaggttctatccctggtctcgatcagtgagttagagatctggcg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCATGCAGTGCCTTGAAATGTAGGCCCAGGAACCAGACTCTCCCCTGAGAGCAGCGGG
AAGCTAACACATGGAGCATGCAGGGAAGTGACTTGTGGATGTCACCGTCATAAGGTCATT
GATCACAGCAGGACATGGACAAGGTTTGCAGAGCAGCAGTCTGGAGGCAGGGAGGCTGGT
GAGGAGGCCGTCGAGGGTACCCAGCAGGGAGGTGATGGGGGCCAGCATGAAATCATGGAA
CGGGCAGCTCGGTGGCAGACAAGGCAGCTCCTGTCCATTTGAGGGACATCTGTGGACCCT
CTCGCCACCCCCTTCGGGGGGCAAAACCTCAGCAGAACAAGACTGACCAGAATGCAAAGG
ATCCTGATCCCAgagttcccgttgtggctcaatggaaacaaatctgagtagtatccatga
ggatgcaggttctatccctggtctcgatcagtgagttagagatctggcg

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               1-356, gnl|bosTau2|chr18 (7336811-7337165)
               

               
               1-356, gnl|canFam2|chr5 (73489405-73488766)
               

               
               1-356, gnl|hg17|chr16 (80033278-80033932)
               

               
               1-356, gnl|Hg17|chr16 (80033902-80033557)
               

               
               1-356, gnl|mm7|chr8 (115866242-115866841)
               

               
               1-356, gnl|Mm7|chr8 (115866806-115866487)
               

               
               1-356, gnl|oryCun1|scaffold_199657 (165212-165727)
               

               
               1-356, gnl|panTro1|chr18 (74903184-74903839)
               

               
               1-356, gnl|rheMac2|chr20 (79577212-79577863)
               

               
               1-356, gnl|rn3|chr19 (47363446-47364050)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-356, gnl|bosTau2|chr18 (7336811-7337165)
               

               
               1-356, gnl|canFam2|chr5 (73489405-73488766)
               

               
               1-356, gnl|hg17|chr16 (80033278-80033932)
               

               
               1-356, gnl|Hg17|chr16 (80033902-80033557)
               

               
               1-356, gnl|mm7|chr8 (115866242-115866841)
               

               
               1-356, gnl|Mm7|chr8 (115866806-115866487)
               

               
               1-356, gnl|oryCun1|scaffold_199657 (165212-165727)
               

               
               1-356, gnl|panTro1|chr18 (74903184-74903839)
               

               
               1-356, gnl|rheMac2|chr20 (79577212-79577863)
               

               
               1-356, gnl|rn3|chr19 (47363446-47364050)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-356, gnl\|bosTau2\|chr18 (7336811-7337165)
	1-356, gnl\|canFam2\|chr5 (73489405-73488766)
	1-356, gnl\|hg17\|chr16 (80033278-80033932)
	1-356, gnl\|Hg17\|chr16 (80033902-80033557)
	1-356, gnl\|mm7\|chr8 (115866242-115866841)
	1-356, gnl\|Mm7\|chr8 (115866806-115866487)
	1-356, gnl\|oryCun1\|scaffold_199657 (165212-165727)
	1-356, gnl\|panTro1\|chr18 (74903184-74903839)
	1-356, gnl\|rheMac2\|chr20 (79577212-79577863)
	1-356, gnl\|rn3\|chr19 (47363446-47364050)