Non-Coding RNA Search

rpgl03_k21.y1

Sequence:


               
               TTCATCCTTAGAGTCATTGATAAACTTAAGAACAAATTGATAAACTTAATAGGCTTTCGG
TTGAGTGCTGTTTTTTAATGAGATAAATGGTGCTGCTGAGTCTCTGCTGAAACAGAAAAG
GGTTAAATAAGTTTCATGACCTTCTATCTACCAAGTGTTCTATGACTGCCAAAGAGCAAA
AGAACACAGTTTGGGGCAGGTAAACAAGGGAGTAGGCATACTGAGGTACTTAATCAGATT
TTAGGGATTAGTATTATGGCTGTGAAAGTTTGGCCTTGAAAGAGAGTCTTTGGCCACTAA
AGTATAGTTCTTGGTCTGGTATCTTCCACAACTACTGGGAATCAAGGTCTCCTGGTGGTT
TAATAGCTGCCAAGCAGTGTAATGATACCTGGCCTTCTGCTTGACTTGGAAGGGCAGGTG
CCCGCAGCCCCACGAGGGGTTCTCCTCTGGGAAGGTGATCTTAGTTCATGTCTCAGTAAA
TGGAGCTTGCAGGACTGGAGCAGAGGAGATATGAGTCTAAGGTCAGCTCAGGCTGCCTTA
AACTTTTGCAGCTTACAATTTCCTGCAAAGTGGCCAGCCTGGTAATGAGCTATTCACTGG
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATCCTTAGAGTCATTGATAAACTTAAGAACAAATTGATAAACTTAATAGGCTTTCGG
TTGAGTGCTGTTTTTTAATGAGATAAATGGTGCTGCTGAGTCTCTGCTGAAACAGAAAAG
GGTTAAATAAGTTTCATGACCTTCTATCTACCAAGTGTTCTATGACTGCCAAAGAGCAAA
AGAACACAGTTTGGGGCAGGTAAACAAGGGAGTAGGCATACTGAGGTACTTAATCAGATT
TTAGGGATTAGTATTATGGCTGTGAAAGTTTGGCCTTGAAAGAGAGTCTTTGGCCACTAA
AGTATAGTTCTTGGTCTGGTATCTTCCACAACTACTGGGAATCAAGGTCTCCTGGTGGTT
TAATAGCTGCCAAGCAGTGTAATGATACCTGGCCTTCTGCTTGACTTGGAAGGGCAGGTG
CCCGCAGCCCCACGAGGGGTTCTCCTCTGGGAAGGTGATCTTAGTTCATGTCTCAGTAAA
TGGAGCTTGCAGGACTGGAGCAGAGGAGATATGAGTCTAAGGTCAGCTCAGGCTGCCTTA
AACTTTTGCAGCTTACAATTTCCTGCAAAGTGGCCAGCCTGGTAATGAGCTATTCACTGG
C

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               382-569, + strand, RNAz p=0.886321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               382-569, + strand, RNAz p=0.886321

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr10 (30419281-30419877)
               

               
               1-601, gnl|Hg17|chr15 (62579783-62580368)
               

               
               1-601, gnl|Mm7|chr9 (65823922-65823320)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr10 (30419281-30419877)
               

               
               1-601, gnl|Hg17|chr15 (62579783-62580368)
               

               
               1-601, gnl|Mm7|chr9 (65823922-65823320)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-601, gnl\|bosTau2\|chr10 (30419281-30419877)
	1-601, gnl\|Hg17\|chr15 (62579783-62580368)
	1-601, gnl\|Mm7\|chr9 (65823922-65823320)