Non-Coding RNA Search

rpgl05_a3.y1

Sequence:


               
               CACATCCTGCAAAAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGC
TGTCATCCTGGCCATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGA
GTTTACAATGCAGGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCT
GGGTGCCCCAATCTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGC
GAGGTCCAAGAAGACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGT
GGCCAAAGCATTTACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGA
ATGCCACTGCAGTACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTG
ATGACTGCTGATTTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGA
TAAAATCCTCGCTTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGC
TTTATTGCTTTTCTCTTTATCCTACAATATAATCGGCAGTCTCGCTCTTTTCATTTGGAA
CAAAATGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCCTGCAAAAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGC
TGTCATCCTGGCCATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGA
GTTTACAATGCAGGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCT
GGGTGCCCCAATCTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGC
GAGGTCCAAGAAGACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGT
GGCCAAAGCATTTACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGA
ATGCCACTGCAGTACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTG
ATGACTGCTGATTTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGA
TAAAATCCTCGCTTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGC
TTTATTGCTTTTCTCTTTATCCTACAATATAATCGGCAGTCTCGCTCTTTTCATTTGGAA
CAAAATGCAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|217699|dbj|BAA00664.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|217699|dbj|BAA00664.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               26-135, - strand, RNAz p=0.709213
               

               
               29-135, - strand, RNAz p=0.770081

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-135, - strand, RNAz p=0.709213
               

               
               29-135, - strand, RNAz p=0.770081

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               26-135, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               26-135, gnl|canFam2|chr12 (49613806-49614054)
               

               
               26-135, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               26-135, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               26-135, gnl|galGal2|chr3 (74941271-74940984)
               

               
               26-135, gnl|hg17|chr6 (87854417-87854661)
               

               
               26-135, gnl|Hg17|chr6 (87854646-87854549)
               

               
               26-135, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               26-135, gnl|mm7|chr4 (35042915-35042665)
               

               
               26-135, gnl|Mm7|chr4 (35042677-35042786)
               

               
               26-135, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               26-135, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               26-135, gnl|panTro1|chr5 (89558008-89558252)
               

               
               26-135, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               26-135, gnl|rn3|chr5 (51547978-51547724)
               

               
               26-135, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               318-606, gnl|bosTau2|chr9 (35161493-35161779)
               

               
               318-606, gnl|Hg17|chr6 (87852272-87851987)
               

               
               318-606, gnl|Mm7|chr4 (35045743-35045998)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-135, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               26-135, gnl|canFam2|chr12 (49613806-49614054)
               

               
               26-135, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               26-135, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               26-135, gnl|galGal2|chr3 (74941271-74940984)
               

               
               26-135, gnl|hg17|chr6 (87854417-87854661)
               

               
               26-135, gnl|Hg17|chr6 (87854646-87854549)
               

               
               26-135, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               26-135, gnl|mm7|chr4 (35042915-35042665)
               

               
               26-135, gnl|Mm7|chr4 (35042677-35042786)
               

               
               26-135, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               26-135, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               26-135, gnl|panTro1|chr5 (89558008-89558252)
               

               
               26-135, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               26-135, gnl|rn3|chr5 (51547978-51547724)
               

               
               26-135, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               318-606, gnl|bosTau2|chr9 (35161493-35161779)
               

               
               318-606, gnl|Hg17|chr6 (87852272-87851987)
               

               
               318-606, gnl|Mm7|chr4 (35045743-35045998)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	26-135, - strand, RNAz p=0.709213
	29-135, - strand, RNAz p=0.770081

	26-135, gnl\|bosTau2\|chr9 (35159479-35159588)
	26-135, gnl\|canFam2\|chr12 (49613806-49614054)
	26-135, gnl\|dasNov1\|scaffold_13540 (18702-18448)
	26-135, gnl\|echTel1\|scaffold_314385 (36768-37022)
	26-135, gnl\|galGal2\|chr3 (74941271-74940984)
	26-135, gnl\|hg17\|chr6 (87854417-87854661)
	26-135, gnl\|Hg17\|chr6 (87854646-87854549)
	26-135, gnl\|loxAfr1\|scaffold_12882 (14626-14873)
	26-135, gnl\|mm7\|chr4 (35042915-35042665)
	26-135, gnl\|Mm7\|chr4 (35042677-35042786)
	26-135, gnl\|monDom2\|scaffold_0 (142157677-142157424)
	26-135, gnl\|oryCun1\|scaffold_198549 (4444-4688)
	26-135, gnl\|panTro1\|chr5 (89558008-89558252)
	26-135, gnl\|rheMac2\|chr4 (83036153-83036407)
	26-135, gnl\|rn3\|chr5 (51547978-51547724)
	26-135, gnl\|xenTro1\|scaffold_73 (1023414-1023201)

	318-606, gnl\|bosTau2\|chr9 (35161493-35161779)
	318-606, gnl\|Hg17\|chr6 (87852272-87851987)
	318-606, gnl\|Mm7\|chr4 (35045743-35045998)