Non-Coding RNA Search

rpgl06_d14.y1

Sequence:


               
               TGTATTTGAAGTTCTAGACACTGCAGTAAAGCAAGAAAAATAATATGATCTACACAGTCA
TGCCATCTGTAAATAAAGGTAGGTTCTTCTTCCTTTATTTACAGATGGCATGACTGTGTA
GATAGAAAATCCTAAGGAAACCACAAAGAATAGCCGTTGGAACTAATAAGCAAATCTTTC
ACGGTTTCAATGAACAATTGAAAATGAATTTTAggagttcccattgtggctcagcggtaa
cgaacctgattggtatccatgaggatgcaggttcagttcctggcgtttctcagtgggtta
aggatccgg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATTTGAAGTTCTAGACACTGCAGTAAAGCAAGAAAAATAATATGATCTACACAGTCA
TGCCATCTGTAAATAAAGGTAGGTTCTTCTTCCTTTATTTACAGATGGCATGACTGTGTA
GATAGAAAATCCTAAGGAAACCACAAAGAATAGCCGTTGGAACTAATAAGCAAATCTTTC
ACGGTTTCAATGAACAATTGAAAATGAATTTTAggagttcccattgtggctcagcggtaa
cgaacctgattggtatccatgaggatgcaggttcagttcctggcgtttctcagtgggtta
aggatccgg

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-213, gnl|bosTau2|chr25 (14384603-14384830)
               

               
               1-213, gnl|canFam2|chr6 (31469288-31469801)
               

               
               1-213, gnl|canFam2|chr6 (31469801-31469267)
               

               
               1-213, gnl|hg17|chr16 (15011960-15012443)
               

               
               1-213, gnl|hg17|chr16 (68621070-68621572)
               

               
               1-213, gnl|loxAfr1|scaffold_30852 (21408-20889)
               

               
               1-213, gnl|loxAfr1|scaffold_30852 (20889-21429)
               

               
               1-213, gnl|panTro1|chr18 (15398086-15398570)
               

               
               1-213, gnl|panTro1|chr18 (15398570-15398065)
               

               
               1-213, gnl|rheMac2|chr20 (15001338-15000852)
               

               
               1-213, gnl|rheMac2|chr20 (15000852-15001338)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-213, gnl|bosTau2|chr25 (14384603-14384830)
               

               
               1-213, gnl|canFam2|chr6 (31469288-31469801)
               

               
               1-213, gnl|canFam2|chr6 (31469801-31469267)
               

               
               1-213, gnl|hg17|chr16 (15011960-15012443)
               

               
               1-213, gnl|hg17|chr16 (68621070-68621572)
               

               
               1-213, gnl|loxAfr1|scaffold_30852 (21408-20889)
               

               
               1-213, gnl|loxAfr1|scaffold_30852 (20889-21429)
               

               
               1-213, gnl|panTro1|chr18 (15398086-15398570)
               

               
               1-213, gnl|panTro1|chr18 (15398570-15398065)
               

               
               1-213, gnl|rheMac2|chr20 (15001338-15000852)
               

               
               1-213, gnl|rheMac2|chr20 (15000852-15001338)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-213, gnl\|bosTau2\|chr25 (14384603-14384830)
	1-213, gnl\|canFam2\|chr6 (31469288-31469801)
	1-213, gnl\|canFam2\|chr6 (31469801-31469267)
	1-213, gnl\|hg17\|chr16 (15011960-15012443)
	1-213, gnl\|hg17\|chr16 (68621070-68621572)
	1-213, gnl\|loxAfr1\|scaffold_30852 (21408-20889)
	1-213, gnl\|loxAfr1\|scaffold_30852 (20889-21429)
	1-213, gnl\|panTro1\|chr18 (15398086-15398570)
	1-213, gnl\|panTro1\|chr18 (15398570-15398065)
	1-213, gnl\|rheMac2\|chr20 (15001338-15000852)
	1-213, gnl\|rheMac2\|chr20 (15000852-15001338)