Non-Coding RNA Search

rpgl08_m9.y1

Sequence:


               
               GACTGCATGATCAACCAGGAAGGGGACAGCAGGAGTTAGAGGACAGGGCTTGATGGGGTC
TCAGAGAAGCAGGAGTGCTGAGGAAGCCTGTGGGACCAGCTTAACCCGGGAGAGGCAGAC
ATCCATTTTAGGTAACATTAGACCAGTGCAGGTCATGATGCTTGGGGGTTGAAGGGCCCA
GCACATCCAGGAGGGAATCTGTTGCAACCCCACAAGGGGGCAGCAAGCCATTACCTTGAC
CCTTTCTGAAAGGCGAAGCCAGCTGTTAACCATTTCTGGCAGCTTTAAGAGTCAAGGCTG
TTTCCACCACTGAGTTAGAATTGCTTTACTTTTAATTTGCTCCCACTGGTCCTGATTAGA
CTCTGCAGCTCTGCAGAGTCATTCTTCAAAGGCATCACAATAGCTCCCTTCCACACAGGT
CTTCTTGCCCTCAGGCCAGCAGCTCCTGGCCCTCATGTATCTTCTTTGGTAATTAGAAAT
GAGGACCCAAATGGAAGGCGGTTGAGCAGGGCACAGGGCCGCTCTCGCCTTTCTAGTTCT
GGAACTTGCCATTCTCTTCCCATAGCCCAGACTCCCTCCAGCTTTGGCTCACCACCCTGA
GGCTCCATATTGTCTTTACAATCAGGCAGCCCCCCATGTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCATGATCAACCAGGAAGGGGACAGCAGGAGTTAGAGGACAGGGCTTGATGGGGTC
TCAGAGAAGCAGGAGTGCTGAGGAAGCCTGTGGGACCAGCTTAACCCGGGAGAGGCAGAC
ATCCATTTTAGGTAACATTAGACCAGTGCAGGTCATGATGCTTGGGGGTTGAAGGGCCCA
GCACATCCAGGAGGGAATCTGTTGCAACCCCACAAGGGGGCAGCAAGCCATTACCTTGAC
CCTTTCTGAAAGGCGAAGCCAGCTGTTAACCATTTCTGGCAGCTTTAAGAGTCAAGGCTG
TTTCCACCACTGAGTTAGAATTGCTTTACTTTTAATTTGCTCCCACTGGTCCTGATTAGA
CTCTGCAGCTCTGCAGAGTCATTCTTCAAAGGCATCACAATAGCTCCCTTCCACACAGGT
CTTCTTGCCCTCAGGCCAGCAGCTCCTGGCCCTCATGTATCTTCTTTGGTAATTAGAAAT
GAGGACCCAAATGGAAGGCGGTTGAGCAGGGCACAGGGCCGCTCTCGCCTTTCTAGTTCT
GGAACTTGCCATTCTCTTCCCATAGCCCAGACTCCCTCCAGCTTTGGCTCACCACCCTGA
GGCTCCATATTGTCTTTACAATCAGGCAGCCCCCCATGTCTTC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-488, gnl|bosTau2|chr18 (28723272-28722781)
               

               
               1-488, gnl|Hg17|chr16 (65852007-65852524)
               

               
               1-488, gnl|Mm7|chr8 (103958277-103958726)
               


               
               510-643, gnl|bosTau2|chr18 (28722675-28722538)
               

               
               510-643, gnl|canFam2|chr5 (85125517-85125181)
               

               
               510-643, gnl|dasNov1|scaffold_66690 (5611-5958)
               

               
               510-643, gnl|echTel1|scaffold_182241 (3814-4206)
               

               
               510-643, gnl|hg17|chr16 (65852392-65852741)
               

               
               510-643, gnl|Hg17|chr16 (65852567-65852701)
               

               
               510-643, gnl|loxAfr1|scaffold_54994 (5527-5179)
               

               
               510-643, gnl|mm7|chr8 (103958602-103958904)
               

               
               510-643, gnl|oryCun1|scaffold_195881 (5213-4887)
               

               
               510-643, gnl|panTro1|chr18 (60112094-60112443)
               

               
               510-643, gnl|rheMac2|chr20 (65562776-65563125)
               

               
               510-643, gnl|rn3|chr19 (35179973-35180273)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-488, gnl|bosTau2|chr18 (28723272-28722781)
               

               
               1-488, gnl|Hg17|chr16 (65852007-65852524)
               

               
               1-488, gnl|Mm7|chr8 (103958277-103958726)
               


               
               510-643, gnl|bosTau2|chr18 (28722675-28722538)
               

               
               510-643, gnl|canFam2|chr5 (85125517-85125181)
               

               
               510-643, gnl|dasNov1|scaffold_66690 (5611-5958)
               

               
               510-643, gnl|echTel1|scaffold_182241 (3814-4206)
               

               
               510-643, gnl|hg17|chr16 (65852392-65852741)
               

               
               510-643, gnl|Hg17|chr16 (65852567-65852701)
               

               
               510-643, gnl|loxAfr1|scaffold_54994 (5527-5179)
               

               
               510-643, gnl|mm7|chr8 (103958602-103958904)
               

               
               510-643, gnl|oryCun1|scaffold_195881 (5213-4887)
               

               
               510-643, gnl|panTro1|chr18 (60112094-60112443)
               

               
               510-643, gnl|rheMac2|chr20 (65562776-65563125)
               

               
               510-643, gnl|rn3|chr19 (35179973-35180273)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-488, gnl\|bosTau2\|chr18 (28723272-28722781)
	1-488, gnl\|Hg17\|chr16 (65852007-65852524)
	1-488, gnl\|Mm7\|chr8 (103958277-103958726)

	510-643, gnl\|bosTau2\|chr18 (28722675-28722538)
	510-643, gnl\|canFam2\|chr5 (85125517-85125181)
	510-643, gnl\|dasNov1\|scaffold_66690 (5611-5958)
	510-643, gnl\|echTel1\|scaffold_182241 (3814-4206)
	510-643, gnl\|hg17\|chr16 (65852392-65852741)
	510-643, gnl\|Hg17\|chr16 (65852567-65852701)
	510-643, gnl\|loxAfr1\|scaffold_54994 (5527-5179)
	510-643, gnl\|mm7\|chr8 (103958602-103958904)
	510-643, gnl\|oryCun1\|scaffold_195881 (5213-4887)
	510-643, gnl\|panTro1\|chr18 (60112094-60112443)
	510-643, gnl\|rheMac2\|chr20 (65562776-65563125)
	510-643, gnl\|rn3\|chr19 (35179973-35180273)