Non-Coding RNA Search

rpgl09_l18.y1

Sequence:


               
               GACCTAAGGTCTGTATGTCAAGCAGCCAGGCCTGGCATTTTGGTTTTGCACTAAGAAAAT
TAAAGCACATTAAGCACAGGGGCTTTTGCTTACTTTCCTGGCAAATCACCTTCTGTGCCA
ATGGCCTTGGGCTGCTTGATCTCCCAGACAAGGCATTTTGAGTAGAAACAAGCTCTGGGC
TTTGAGAGCTAAACAGGTTTTTTTTCCTACGTCATCATCAGTCACAAGGACTGGAAATTA
GTCGTCTTCTCTAATCCTTCACAAACAAACATGATGCATACCTCTCTGGAGCTGCAGCTT
CTAGCTTTCTTTGGGTGAATGGTAAAGACTGTGGCCAGATCAGGCCGGCTATATCTCAGG
GTCTGGCAAAGCAGGCCCCAGAGTGCTTCCACAACAGGATCAGGCCCATTTTGGATCACC
CATCTCCCTCTATGCCAGGACAGCAAGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTAAGGTCTGTATGTCAAGCAGCCAGGCCTGGCATTTTGGTTTTGCACTAAGAAAAT
TAAAGCACATTAAGCACAGGGGCTTTTGCTTACTTTCCTGGCAAATCACCTTCTGTGCCA
ATGGCCTTGGGCTGCTTGATCTCCCAGACAAGGCATTTTGAGTAGAAACAAGCTCTGGGC
TTTGAGAGCTAAACAGGTTTTTTTTCCTACGTCATCATCAGTCACAAGGACTGGAAATTA
GTCGTCTTCTCTAATCCTTCACAAACAAACATGATGCATACCTCTCTGGAGCTGCAGCTT
CTAGCTTTCTTTGGGTGAATGGTAAAGACTGTGGCCAGATCAGGCCGGCTATATCTCAGG
GTCTGGCAAAGCAGGCCCCAGAGTGCTTCCACAACAGGATCAGGCCCATTTTGGATCACC
CATCTCCCTCTATGCCAGGACAGCAAGCTTC

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-451, gnl|bosTau2|chr8 (27796341-27796782)
               

               
               3-451, gnl|canFam2|chr11 (54607583-54608052)
               

               
               3-451, gnl|dasNov1|scaffold_158589 (1828-1406)
               

               
               3-451, gnl|hg17|chr9 (34969912-34970364)
               

               
               3-451, gnl|Hg17|chr9 (34969950-34970384)
               

               
               3-451, gnl|loxAfr1|scaffold_9382 (85200-84729)
               

               
               3-451, gnl|mm7|chr4 (42955316-42955743)
               

               
               3-451, gnl|Mm7|chr4 (42955352-42955743)
               

               
               3-451, gnl|oryCun1|scaffold_215430 (53920-54349)
               

               
               3-451, gnl|panTro1|chr11 (35523407-35523859)
               

               
               3-451, gnl|rheMac2|chr15 (42564220-42563771)
               

               
               3-451, gnl|rn3|chr5 (59429709-59430180)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-451, gnl|bosTau2|chr8 (27796341-27796782)
               

               
               3-451, gnl|canFam2|chr11 (54607583-54608052)
               

               
               3-451, gnl|dasNov1|scaffold_158589 (1828-1406)
               

               
               3-451, gnl|hg17|chr9 (34969912-34970364)
               

               
               3-451, gnl|Hg17|chr9 (34969950-34970384)
               

               
               3-451, gnl|loxAfr1|scaffold_9382 (85200-84729)
               

               
               3-451, gnl|mm7|chr4 (42955316-42955743)
               

               
               3-451, gnl|Mm7|chr4 (42955352-42955743)
               

               
               3-451, gnl|oryCun1|scaffold_215430 (53920-54349)
               

               
               3-451, gnl|panTro1|chr11 (35523407-35523859)
               

               
               3-451, gnl|rheMac2|chr15 (42564220-42563771)
               

               
               3-451, gnl|rn3|chr5 (59429709-59430180)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	3-451, gnl\|bosTau2\|chr8 (27796341-27796782)
	3-451, gnl\|canFam2\|chr11 (54607583-54608052)
	3-451, gnl\|dasNov1\|scaffold_158589 (1828-1406)
	3-451, gnl\|hg17\|chr9 (34969912-34970364)
	3-451, gnl\|Hg17\|chr9 (34969950-34970384)
	3-451, gnl\|loxAfr1\|scaffold_9382 (85200-84729)
	3-451, gnl\|mm7\|chr4 (42955316-42955743)
	3-451, gnl\|Mm7\|chr4 (42955352-42955743)
	3-451, gnl\|oryCun1\|scaffold_215430 (53920-54349)
	3-451, gnl\|panTro1\|chr11 (35523407-35523859)
	3-451, gnl\|rheMac2\|chr15 (42564220-42563771)
	3-451, gnl\|rn3\|chr5 (59429709-59430180)