Non-Coding RNA Search

rpgl10_p12.y1

Sequence:


               
               CCCAGGCCCCACGTCAGCTCTCCCCCGTCTTGCTGCAAGGCCATGGCCCAGCTCTTCTCC
TTTCTGGACCTCAGGCCTCACCTCCCGAACAACCCAATAACCTCCAGGCTCTCTTGGCCC
CGGTGGTCAGTGCCAGGACTCCTGTGTTTCTGGACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGGCCCCACGTCAGCTCTCCCCCGTCTTGCTGCAAGGCCATGGCCCAGCTCTTCTCC
TTTCTGGACCTCAGGCCTCACCTCCCGAACAACCCAATAACCTCCAGGCTCTCTTGGCCC
CGGTGGTCAGTGCCAGGACTCCTGTGTTTCTGGACAGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.956264
               

               
               15-115, - strand, RNAz p=0.872197

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.956264
               

               
               15-115, - strand, RNAz p=0.872197

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-156, gnl|bosTau2|chr5 (45736251-45736097)
               

               
               1-156, gnl|canFam2|chr10 (30403493-30403195)
               

               
               1-156, gnl|dasNov1|scaffold_15957 (43427-43743)
               

               
               1-156, gnl|echTel1|scaffold_156977 (632-935)
               

               
               1-156, gnl|hg17|chr22 (35926445-35926782)
               

               
               1-156, gnl|Hg17|chr22 (35926606-35926453)
               

               
               1-156, gnl|loxAfr1|scaffold_7581 (61418-61078)
               

               
               1-156, gnl|mm7|chr15 (78621522-78621830)
               

               
               1-156, gnl|Mm7|chr15 (78621680-78621530)
               

               
               1-156, gnl|monDom2|scaffold_167 (107229-107513)
               

               
               1-156, gnl|panTro1|chr23 (36086933-36087270)
               

               
               1-156, gnl|rheMac2|chr10 (81104400-81104739)
               

               
               1-156, gnl|rn3|chr7 (116531236-116531547)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr5 (45736251-45736097)
               

               
               1-156, gnl|canFam2|chr10 (30403493-30403195)
               

               
               1-156, gnl|dasNov1|scaffold_15957 (43427-43743)
               

               
               1-156, gnl|echTel1|scaffold_156977 (632-935)
               

               
               1-156, gnl|hg17|chr22 (35926445-35926782)
               

               
               1-156, gnl|Hg17|chr22 (35926606-35926453)
               

               
               1-156, gnl|loxAfr1|scaffold_7581 (61418-61078)
               

               
               1-156, gnl|mm7|chr15 (78621522-78621830)
               

               
               1-156, gnl|Mm7|chr15 (78621680-78621530)
               

               
               1-156, gnl|monDom2|scaffold_167 (107229-107513)
               

               
               1-156, gnl|panTro1|chr23 (36086933-36087270)
               

               
               1-156, gnl|rheMac2|chr10 (81104400-81104739)
               

               
               1-156, gnl|rn3|chr7 (116531236-116531547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-120, - strand, RNAz p=0.956264
	15-115, - strand, RNAz p=0.872197

	1-156, gnl\|bosTau2\|chr5 (45736251-45736097)
	1-156, gnl\|canFam2\|chr10 (30403493-30403195)
	1-156, gnl\|dasNov1\|scaffold_15957 (43427-43743)
	1-156, gnl\|echTel1\|scaffold_156977 (632-935)
	1-156, gnl\|hg17\|chr22 (35926445-35926782)
	1-156, gnl\|Hg17\|chr22 (35926606-35926453)
	1-156, gnl\|loxAfr1\|scaffold_7581 (61418-61078)
	1-156, gnl\|mm7\|chr15 (78621522-78621830)
	1-156, gnl\|Mm7\|chr15 (78621680-78621530)
	1-156, gnl\|monDom2\|scaffold_167 (107229-107513)
	1-156, gnl\|panTro1\|chr23 (36086933-36087270)
	1-156, gnl\|rheMac2\|chr10 (81104400-81104739)
	1-156, gnl\|rn3\|chr7 (116531236-116531547)