Non-Coding RNA Search

rpgl12_l16.y1

Sequence:


               
               GAAGAGCCAGGTCTGGCAGCTAAGCCAAGAGCTTTCTGTCCACATGTGAGGGATGGCCTG
AAGAGAGCACTCCAGGGCTGTTGGGGGTTGGGGGAGCATGTCAAACGCCAAGGGTTCAGC
AAATTATACCCGTACGCTAGGCAGAAGCACACAAGGAAGGCACCCCCACTCTGTGGGTGA
GACAAAGAAGCGGCTCCCTTCCCACGTGCCAACCCATCTGCTTCTTTGCCTTTACCAACA
TGCCTTTTTTTTTTTCCTTTCTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGCCAGGTCTGGCAGCTAAGCCAAGAGCTTTCTGTCCACATGTGAGGGATGGCCTG
AAGAGAGCACTCCAGGGCTGTTGGGGGTTGGGGGAGCATGTCAAACGCCAAGGGTTCAGC
AAATTATACCCGTACGCTAGGCAGAAGCACACAAGGAAGGCACCCCCACTCTGTGGGTGA
GACAAAGAAGCGGCTCCCTTCCCACGTGCCAACCCATCTGCTTCTTTGCCTTTACCAACA
TGCCTTTTTTTTTTTCCTTTCTTCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               122-263, - strand, RNAz p=0.999061
               

               
               146-263, - strand, RNAz p=0.98568

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-263, - strand, RNAz p=0.999061
               

               
               146-263, - strand, RNAz p=0.98568

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-263, gnl|bosTau2|chr18 (15229824-15230084)
               

               
               3-263, gnl|canFam2|chr5 (84885187-84884356)
               

               
               3-263, gnl|dasNov1|scaffold_15071 (5528-4638)
               

               
               3-263, gnl|hg17|chr16 (66140108-66140983)
               

               
               3-263, gnl|Hg17|chr16 (66141050-66140765)
               

               
               3-263, gnl|loxAfr1|scaffold_175387 (989-95)
               

               
               3-263, gnl|mm7|chr8 (104222596-104223325)
               

               
               3-263, gnl|Mm7|chr8 (104223621-104223126)
               

               
               3-263, gnl|oryCun1|scaffold_172762 (6681-7556)
               

               
               3-263, gnl|panTro1|chr18 (60435564-60436439)
               

               
               3-263, gnl|rheMac2|chr20 (65855970-65856831)
               

               
               3-263, gnl|rn3|chr19 (35453058-35453793)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-263, gnl|bosTau2|chr18 (15229824-15230084)
               

               
               3-263, gnl|canFam2|chr5 (84885187-84884356)
               

               
               3-263, gnl|dasNov1|scaffold_15071 (5528-4638)
               

               
               3-263, gnl|hg17|chr16 (66140108-66140983)
               

               
               3-263, gnl|Hg17|chr16 (66141050-66140765)
               

               
               3-263, gnl|loxAfr1|scaffold_175387 (989-95)
               

               
               3-263, gnl|mm7|chr8 (104222596-104223325)
               

               
               3-263, gnl|Mm7|chr8 (104223621-104223126)
               

               
               3-263, gnl|oryCun1|scaffold_172762 (6681-7556)
               

               
               3-263, gnl|panTro1|chr18 (60435564-60436439)
               

               
               3-263, gnl|rheMac2|chr20 (65855970-65856831)
               

               
               3-263, gnl|rn3|chr19 (35453058-35453793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	122-263, - strand, RNAz p=0.999061
	146-263, - strand, RNAz p=0.98568

	3-263, gnl\|bosTau2\|chr18 (15229824-15230084)
	3-263, gnl\|canFam2\|chr5 (84885187-84884356)
	3-263, gnl\|dasNov1\|scaffold_15071 (5528-4638)
	3-263, gnl\|hg17\|chr16 (66140108-66140983)
	3-263, gnl\|Hg17\|chr16 (66141050-66140765)
	3-263, gnl\|loxAfr1\|scaffold_175387 (989-95)
	3-263, gnl\|mm7\|chr8 (104222596-104223325)
	3-263, gnl\|Mm7\|chr8 (104223621-104223126)
	3-263, gnl\|oryCun1\|scaffold_172762 (6681-7556)
	3-263, gnl\|panTro1\|chr18 (60435564-60436439)
	3-263, gnl\|rheMac2\|chr20 (65855970-65856831)
	3-263, gnl\|rn3\|chr19 (35453058-35453793)