Non-Coding RNA Search

rpgl12_p15.y1

Sequence:


               
               CTGGGTTAAGTGCTCATCCTTCAATCAAAGGGCCAAACATCTTTCAGATCCCAGGTCAGA
GGTCACTCGCTTTGGGGAAATCAGAAGACTTTAAAGAGGTTGAAAAGCCAGGATTTCCTC
ACAGAAAGGAGCCACATGGGATACTCTTAGGACCGTCACATTCTCCTAATTCCCACCAGA
ACATTAACAAATCATTTCCCTGATTTGATCAGCAGGAGTCCAAGGACCTATAGTTCTGTA
TACTTTCCCGAGCACACAAAAGAATCCTTCACATTGAGAAAATCCACTGTTCTAAATGTG
CGTTTATTACACAAGCCAGGTTTCTATGCACTCTGTTGAGAATAAAAATGGGAGGGATAC
ATAATGTGTTCTAGGAGTCATCATTAGTGTATGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGTTAAGTGCTCATCCTTCAATCAAAGGGCCAAACATCTTTCAGATCCCAGGTCAGA
GGTCACTCGCTTTGGGGAAATCAGAAGACTTTAAAGAGGTTGAAAAGCCAGGATTTCCTC
ACAGAAAGGAGCCACATGGGATACTCTTAGGACCGTCACATTCTCCTAATTCCCACCAGA
ACATTAACAAATCATTTCCCTGATTTGATCAGCAGGAGTCCAAGGACCTATAGTTCTGTA
TACTTTCCCGAGCACACAAAAGAATCCTTCACATTGAGAAAATCCACTGTTCTAAATGTG
CGTTTATTACACAAGCCAGGTTTCTATGCACTCTGTTGAGAATAAAAATGGGAGGGATAC
ATAATGTGTTCTAGGAGTCATCATTAGTGTATGAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-176, - strand, RNAz p=0.942118

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-176, - strand, RNAz p=0.942118

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               25-179, gnl|bosTau2|chr7 (3755844-3755998)
               

               
               25-179, gnl|canFam2|chr10 (66971222-66971351)
               

               
               25-179, gnl|dasNov1|scaffold_280 (229605-229485)
               

               
               25-179, gnl|echTel1|scaffold_314354 (79230-79128)
               

               
               25-179, gnl|hg17|chr2 (64318424-64318550)
               

               
               25-179, gnl|Hg17|chr2 (64318583-64318431)
               

               
               25-179, gnl|loxAfr1|scaffold_2085 (53183-53080)
               

               
               25-179, gnl|oryCun1|scaffold_214220 (93557-93430)
               

               
               25-179, gnl|panTro1|chr12 (66548725-66548851)
               

               
               25-179, gnl|rheMac2|chr13 (64393555-64393681)
               

               
               25-179, gnl|rn3|chr14 (101854878-101854751)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-179, gnl|bosTau2|chr7 (3755844-3755998)
               

               
               25-179, gnl|canFam2|chr10 (66971222-66971351)
               

               
               25-179, gnl|dasNov1|scaffold_280 (229605-229485)
               

               
               25-179, gnl|echTel1|scaffold_314354 (79230-79128)
               

               
               25-179, gnl|hg17|chr2 (64318424-64318550)
               

               
               25-179, gnl|Hg17|chr2 (64318583-64318431)
               

               
               25-179, gnl|loxAfr1|scaffold_2085 (53183-53080)
               

               
               25-179, gnl|oryCun1|scaffold_214220 (93557-93430)
               

               
               25-179, gnl|panTro1|chr12 (66548725-66548851)
               

               
               25-179, gnl|rheMac2|chr13 (64393555-64393681)
               

               
               25-179, gnl|rn3|chr14 (101854878-101854751)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	25-179, gnl\|bosTau2\|chr7 (3755844-3755998)
	25-179, gnl\|canFam2\|chr10 (66971222-66971351)
	25-179, gnl\|dasNov1\|scaffold_280 (229605-229485)
	25-179, gnl\|echTel1\|scaffold_314354 (79230-79128)
	25-179, gnl\|hg17\|chr2 (64318424-64318550)
	25-179, gnl\|Hg17\|chr2 (64318583-64318431)
	25-179, gnl\|loxAfr1\|scaffold_2085 (53183-53080)
	25-179, gnl\|oryCun1\|scaffold_214220 (93557-93430)
	25-179, gnl\|panTro1\|chr12 (66548725-66548851)
	25-179, gnl\|rheMac2\|chr13 (64393555-64393681)
	25-179, gnl\|rn3\|chr14 (101854878-101854751)