Non-Coding RNA Search

rpgl15_g8.y1

Sequence:


               
               AACAGTTATCCCAAGATAGAAATTGTAGCTTTCTTGAGGGAGTGAAACTTCTAGCAAACA
TGATCTGGCTGCCTCTGAGAGATATTCCTGTATCACAGGAACAATTGAGCAAGCAGTGTA
CACAGGCCCTTCCCATTGTGATCCAGAGAATACTGAAGCTCAGAATGCAGTGAACTGTAT
AGGGAGGTTGCTGAACGTTCCATTTTAAAAATGCCCACTAGAGGGAGTATAACATCATAA
ATATTTCCTTTTAGTTGCTGCCTTGCTTCTGCTAAACTATTAGGAATGCAAGATTCAAGT
ACAAATACCTAGAATTTATTTCATACTCTTTTAAATGTTTTTCTCCTTAAGATCTTTTAG
AATATTTTGATAAGCAAAGATTTTTTTAAAAAAAATTAGTGTCATATAGTATGTAACATT
AATACTTTTATTTGTATATGTTAAGAATTCAGAATTTAAAACTATTGGTGGAAATAGAAT
CCAGATCAATTATTTGTGGCTATCAATGTAAAACATCTTGGTTTTACGTGGAATATATTT
CACCAAATTTTGTTAGGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGTTATCCCAAGATAGAAATTGTAGCTTTCTTGAGGGAGTGAAACTTCTAGCAAACA
TGATCTGGCTGCCTCTGAGAGATATTCCTGTATCACAGGAACAATTGAGCAAGCAGTGTA
CACAGGCCCTTCCCATTGTGATCCAGAGAATACTGAAGCTCAGAATGCAGTGAACTGTAT
AGGGAGGTTGCTGAACGTTCCATTTTAAAAATGCCCACTAGAGGGAGTATAACATCATAA
ATATTTCCTTTTAGTTGCTGCCTTGCTTCTGCTAAACTATTAGGAATGCAAGATTCAAGT
ACAAATACCTAGAATTTATTTCATACTCTTTTAAATGTTTTTCTCCTTAAGATCTTTTAG
AATATTTTGATAAGCAAAGATTTTTTTAAAAAAAATTAGTGTCATATAGTATGTAACATT
AATACTTTTATTTGTATATGTTAAGAATTCAGAATTTAAAACTATTGGTGGAAATAGAAT
CCAGATCAATTATTTGTGGCTATCAATGTAAAACATCTTGGTTTTACGTGGAATATATTT
CACCAAATTTTGTTAGGTCTG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               216-535, gnl|bosTau2|chr4 (7798469-7798155)
               

               
               216-535, gnl|canFam2|chr14 (33629051-33629442)
               

               
               216-535, gnl|echTel1|scaffold_297847 (7654-7266)
               

               
               216-535, gnl|hg17|chr7 (15883844-15884207)
               

               
               216-535, gnl|Hg17|chr7 (15884305-15884017)
               

               
               216-535, gnl|loxAfr1|scaffold_17340 (66911-66525)
               

               
               216-535, gnl|mm7|chr12 (34553356-34552975)
               

               
               216-535, gnl|Mm7|chr12 (34552875-34553171)
               

               
               216-535, gnl|oryCun1|scaffold_78295 (1142-755)
               

               
               216-535, gnl|panTro1|chr6 (16771480-16771840)
               

               
               216-535, gnl|rheMac2|chr3 (110046846-110046468)
               

               
               216-535, gnl|rn3|chr6 (55450869-55450498)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-535, gnl|bosTau2|chr4 (7798469-7798155)
               

               
               216-535, gnl|canFam2|chr14 (33629051-33629442)
               

               
               216-535, gnl|echTel1|scaffold_297847 (7654-7266)
               

               
               216-535, gnl|hg17|chr7 (15883844-15884207)
               

               
               216-535, gnl|Hg17|chr7 (15884305-15884017)
               

               
               216-535, gnl|loxAfr1|scaffold_17340 (66911-66525)
               

               
               216-535, gnl|mm7|chr12 (34553356-34552975)
               

               
               216-535, gnl|Mm7|chr12 (34552875-34553171)
               

               
               216-535, gnl|oryCun1|scaffold_78295 (1142-755)
               

               
               216-535, gnl|panTro1|chr6 (16771480-16771840)
               

               
               216-535, gnl|rheMac2|chr3 (110046846-110046468)
               

               
               216-535, gnl|rn3|chr6 (55450869-55450498)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	216-535, gnl\|bosTau2\|chr4 (7798469-7798155)
	216-535, gnl\|canFam2\|chr14 (33629051-33629442)
	216-535, gnl\|echTel1\|scaffold_297847 (7654-7266)
	216-535, gnl\|hg17\|chr7 (15883844-15884207)
	216-535, gnl\|Hg17\|chr7 (15884305-15884017)
	216-535, gnl\|loxAfr1\|scaffold_17340 (66911-66525)
	216-535, gnl\|mm7\|chr12 (34553356-34552975)
	216-535, gnl\|Mm7\|chr12 (34552875-34553171)
	216-535, gnl\|oryCun1\|scaffold_78295 (1142-755)
	216-535, gnl\|panTro1\|chr6 (16771480-16771840)
	216-535, gnl\|rheMac2\|chr3 (110046846-110046468)
	216-535, gnl\|rn3\|chr6 (55450869-55450498)