Non-Coding RNA Search

rpgl18_h22.y1

Sequence:


               
               GAGGATGAGTTTCTTTTAAAAAGAATGATATGTATAGTTTGATAAAGATTTTTTAGGGTG
CCTTAAAAAAAGATTCATTGACATATTTATTTAAGATGAAATAAACAGAGAAAGAAGCTT
ACCCTTTAAATTAGACCAAAAGCCAAGGCAGGCAACAGAAGTGCTTCAGTATTACTTGCT
ATTAGCATGCATCGTTAAGATATAGTTTGTAAACTAAAATACTTTGTACCTAGGGAGACT
TGACTCTTATCAGTTTTATAGCTACAGCATATTCTGTGGAGAATGATATCTCCTCTGCAA
ATAAATAAGAAGGCAGTAAGGAGTGGAGGGGGGCAGGGTAATTCTGTAGGAGAAGAAAAA
ACACCATTAAGCCGTAAGCAATTTTAGAAGTTGGGCATCTTAACTCTGCCAGTTAAAAAT
CCAAGTTAAAGCCGAGTAAAGCCATACTTTCCACTATGGGTCCCTTCTGATGCACATCAG
AAAAAAAATGGCACTAGGAAACTGACACCAGACCAGAACTATACATGTCCTTTAATACAT
GAAATTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGATGAGTTTCTTTTAAAAAGAATGATATGTATAGTTTGATAAAGATTTTTTAGGGTG
CCTTAAAAAAAGATTCATTGACATATTTATTTAAGATGAAATAAACAGAGAAAGAAGCTT
ACCCTTTAAATTAGACCAAAAGCCAAGGCAGGCAACAGAAGTGCTTCAGTATTACTTGCT
ATTAGCATGCATCGTTAAGATATAGTTTGTAAACTAAAATACTTTGTACCTAGGGAGACT
TGACTCTTATCAGTTTTATAGCTACAGCATATTCTGTGGAGAATGATATCTCCTCTGCAA
ATAAATAAGAAGGCAGTAAGGAGTGGAGGGGGGCAGGGTAATTCTGTAGGAGAAGAAAAA
ACACCATTAAGCCGTAAGCAATTTTAGAAGTTGGGCATCTTAACTCTGCCAGTTAAAAAT
CCAAGTTAAAGCCGAGTAAAGCCATACTTTCCACTATGGGTCCCTTCTGATGCACATCAG
AAAAAAAATGGCACTAGGAAACTGACACCAGACCAGAACTATACATGTCCTTTAATACAT
GAAATTTAGG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               4-549, gnl|bosTau2|chr3 (35444674-35444160)
               

               
               4-549, gnl|canFam2|chr6 (55332445-55331995)
               

               
               4-549, gnl|echTel1|scaffold_322067 (79850-79314)
               

               
               4-549, gnl|hg17|chr1 (97591918-97592399)
               

               
               4-549, gnl|Hg17|chr1 (97592539-97592025)
               

               
               4-549, gnl|mm7|chr3 (118879442-118878976)
               

               
               4-549, gnl|Mm7|chr3 (118878840-118879324)
               

               
               4-549, gnl|oryCun1|scaffold_138321 (226-714)
               

               
               4-549, gnl|panTro1|chr1_random (83323118-83322635)
               

               
               4-549, gnl|rheMac2|chr1 (100462944-100463430)
               

               
               4-549, gnl|rn3|chr2 (215424857-215424417)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-549, gnl|bosTau2|chr3 (35444674-35444160)
               

               
               4-549, gnl|canFam2|chr6 (55332445-55331995)
               

               
               4-549, gnl|echTel1|scaffold_322067 (79850-79314)
               

               
               4-549, gnl|hg17|chr1 (97591918-97592399)
               

               
               4-549, gnl|Hg17|chr1 (97592539-97592025)
               

               
               4-549, gnl|mm7|chr3 (118879442-118878976)
               

               
               4-549, gnl|Mm7|chr3 (118878840-118879324)
               

               
               4-549, gnl|oryCun1|scaffold_138321 (226-714)
               

               
               4-549, gnl|panTro1|chr1_random (83323118-83322635)
               

               
               4-549, gnl|rheMac2|chr1 (100462944-100463430)
               

               
               4-549, gnl|rn3|chr2 (215424857-215424417)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	4-549, gnl\|bosTau2\|chr3 (35444674-35444160)
	4-549, gnl\|canFam2\|chr6 (55332445-55331995)
	4-549, gnl\|echTel1\|scaffold_322067 (79850-79314)
	4-549, gnl\|hg17\|chr1 (97591918-97592399)
	4-549, gnl\|Hg17\|chr1 (97592539-97592025)
	4-549, gnl\|mm7\|chr3 (118879442-118878976)
	4-549, gnl\|Mm7\|chr3 (118878840-118879324)
	4-549, gnl\|oryCun1\|scaffold_138321 (226-714)
	4-549, gnl\|panTro1\|chr1_random (83323118-83322635)
	4-549, gnl\|rheMac2\|chr1 (100462944-100463430)
	4-549, gnl\|rn3\|chr2 (215424857-215424417)