Non-Coding RNA Search

rpgl19_i9.y1

Sequence:


               
               TGGGAACTTCCACATGCCTCACCTGTGGCCCTAAAAATAATAATAATAATAATTGAAAGC
AATGGATTTTTCAAGGTTGGCTCAGTTTTTAAAACAGCATGTGGCTGTGGGCTGGCTATG
GTCCAAGCACCACCAGTTTGCCACCTCTGGGCTAGACTGGTGGTTCTCAGCCCCGGCTGG
TAACTGAAATGTCTAGGTAGCTTAAAACACGGATTCCTGAGTCCCAGCCCAGAACCACTG
AATGAGAATGTCTGGGGAGAGGGCCTGAAGAATCTGAACTTGGACTCTAgcctgggatca
gatcctgtctctgcaattcactgtctgtgtgaccttcagcaagtgacttaacctcactgt
gcctccatttcccagtctatgaaatgcaataataatagtatctacctTGTAGAATTGTGC
TAAGATTAAATACATCACTCTATGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAACTTCCACATGCCTCACCTGTGGCCCTAAAAATAATAATAATAATAATTGAAAGC
AATGGATTTTTCAAGGTTGGCTCAGTTTTTAAAACAGCATGTGGCTGTGGGCTGGCTATG
GTCCAAGCACCACCAGTTTGCCACCTCTGGGCTAGACTGGTGGTTCTCAGCCCCGGCTGG
TAACTGAAATGTCTAGGTAGCTTAAAACACGGATTCCTGAGTCCCAGCCCAGAACCACTG
AATGAGAATGTCTGGGGAGAGGGCCTGAAGAATCTGAACTTGGACTCTAgcctgggatca
gatcctgtctctgcaattcactgtctgtgtgaccttcagcaagtgacttaacctcactgt
gcctccatttcccagtctatgaaatgcaataataatagtatctacctTGTAGAATTGTGC
TAAGATTAAATACATCACTCTATGGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               95-275, - strand, RNAz p=0.987756
               

               
               201-313, - strand, RNAz p=0.991275

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-275, - strand, RNAz p=0.987756
               

               
               201-313, - strand, RNAz p=0.991275

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               49-381, gnl|bosTau2|chr18 (49598391-49598718)
               

               
               49-381, gnl|canFam2|chr1 (112564442-112564121)
               

               
               49-381, gnl|dasNov1|scaffold_25869 (22217-21904)
               

               
               49-381, gnl|hg17|chr19 (51145982-51146298)
               

               
               49-381, gnl|Hg17|chr19 (51146957-51145981)
               

               
               49-381, gnl|loxAfr1|scaffold_36798 (13963-14273)
               

               
               49-381, gnl|oryCun1|scaffold_95711 (4751-5011)
               

               
               49-381, gnl|panTro1|chr20 (48459527-48459843)
               

               
               49-381, gnl|rheMac2|chr19 (52472325-52472638)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-381, gnl|bosTau2|chr18 (49598391-49598718)
               

               
               49-381, gnl|canFam2|chr1 (112564442-112564121)
               

               
               49-381, gnl|dasNov1|scaffold_25869 (22217-21904)
               

               
               49-381, gnl|hg17|chr19 (51145982-51146298)
               

               
               49-381, gnl|Hg17|chr19 (51146957-51145981)
               

               
               49-381, gnl|loxAfr1|scaffold_36798 (13963-14273)
               

               
               49-381, gnl|oryCun1|scaffold_95711 (4751-5011)
               

               
               49-381, gnl|panTro1|chr20 (48459527-48459843)
               

               
               49-381, gnl|rheMac2|chr19 (52472325-52472638)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	95-275, - strand, RNAz p=0.987756
	201-313, - strand, RNAz p=0.991275

	49-381, gnl\|bosTau2\|chr18 (49598391-49598718)
	49-381, gnl\|canFam2\|chr1 (112564442-112564121)
	49-381, gnl\|dasNov1\|scaffold_25869 (22217-21904)
	49-381, gnl\|hg17\|chr19 (51145982-51146298)
	49-381, gnl\|Hg17\|chr19 (51146957-51145981)
	49-381, gnl\|loxAfr1\|scaffold_36798 (13963-14273)
	49-381, gnl\|oryCun1\|scaffold_95711 (4751-5011)
	49-381, gnl\|panTro1\|chr20 (48459527-48459843)
	49-381, gnl\|rheMac2\|chr19 (52472325-52472638)