Non-Coding RNA Search

rpgl19_p14.y1

Sequence:


               
               GAAGAAGGACAGTGTGGATACAGTGGCCATTAAGGTGGAGGAGGATGAGAAAAAGGAGGC
CAAGAAGAAGAAAGGCGAGAAATAGGAGAGCTTCCTGGAGGTGGCTCCAGACATCTTAGA
CTCCAAGCTCACACGTGGACCATAGAGGTTGCAGATCATCCTCCTCCAGCTCAGAGAGGG
TTGCTGAAGCCCAGGACCCTGTCTTAGAGCCTATCAGGGCAGGGACAAGACTACATGAGG
TGTTTTGCCTCCCGGCCTGGACTCCACTCCTTTCATCCCGTCCACATGATCGCCCAGCAG
TGGTGGTCTTGGGCCACTCTCCCTCTGTAGATCCAAAGTGGCCTTCACCTACATGCTTCT
GTTCCCTCTTCTGCCAGGAACAGCAGTGACTAAAGGGGTAATGGGATGTGGCTTTTCTTC
TGAAAGGGGATGGCTGACCTTGATGGGCCATAGGTAAGGCCTCACCAGGCTGGTCACAAG
AAGGGATAGGGCCAATGGGGGAAGCTATGGCAGCAGGAGGTTCTCAGACTTGGCTGGATA
GCAGCTTTGGTGGGGAGGGACTGCCCCAAGCCTGGCAGGGCTTCTGGCACAAGGCAGGGC
AGTGAGGGGGACCAGAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAAGGACAGTGTGGATACAGTGGCCATTAAGGTGGAGGAGGATGAGAAAAAGGAGGC
CAAGAAGAAGAAAGGCGAGAAATAGGAGAGCTTCCTGGAGGTGGCTCCAGACATCTTAGA
CTCCAAGCTCACACGTGGACCATAGAGGTTGCAGATCATCCTCCTCCAGCTCAGAGAGGG
TTGCTGAAGCCCAGGACCCTGTCTTAGAGCCTATCAGGGCAGGGACAAGACTACATGAGG
TGTTTTGCCTCCCGGCCTGGACTCCACTCCTTTCATCCCGTCCACATGATCGCCCAGCAG
TGGTGGTCTTGGGCCACTCTCCCTCTGTAGATCCAAAGTGGCCTTCACCTACATGCTTCT
GTTCCCTCTTCTGCCAGGAACAGCAGTGACTAAAGGGGTAATGGGATGTGGCTTTTCTTC
TGAAAGGGGATGGCTGACCTTGATGGGCCATAGGTAAGGCCTCACCAGGCTGGTCACAAG
AAGGGATAGGGCCAATGGGGGAAGCTATGGCAGCAGGAGGTTCTCAGACTTGGCTGGATA
GCAGCTTTGGTGGGGAGGGACTGCCCCAAGCCTGGCAGGGCTTCTGGCACAAGGCAGGGC
AGTGAGGGGGACCAGAAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               368-509, + strand, RNAz p=0.951562

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-509, + strand, RNAz p=0.951562

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_147196, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_147196, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-105, gnl|bosTau2|chr22 (41219356-41219461)
               

               
               1-105, gnl|canFam2|chr20 (45052960-45052824)
               

               
               1-105, gnl|dasNov1|scaffold_184789 (137-4)
               

               
               1-105, gnl|echTel1|scaffold_231462 (6194-6331)
               

               
               1-105, gnl|hg17|chr3 (46726029-46726177)
               

               
               1-105, gnl|Hg17|chr3 (46726098-46726195)
               

               
               1-105, gnl|loxAfr1|scaffold_24408 (23051-23195)
               

               
               1-105, gnl|mm7|chr9 (110564702-110564569)
               

               
               1-105, gnl|Mm7|chr9 (110564643-110564542)
               

               
               1-105, gnl|monDom2|scaffold_5 (80642211-80642336)
               

               
               1-105, gnl|oryCun1|scaffold_204945 (5459-5596)
               

               
               1-105, gnl|panTro1|chr2 (48165926-48166068)
               

               
               1-105, gnl|rheMac2|chr2 (89813311-89813169)
               

               
               1-105, gnl|rn3|chr8 (115274925-115274790)
               


               
               106-620, gnl|bosTau2|chr22 (41219504-41220019)
               

               
               106-620, gnl|Hg17|chr3 (46726238-46726767)
               

               
               106-620, gnl|Mm7|chr9 (110564500-110564054)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-105, gnl|bosTau2|chr22 (41219356-41219461)
               

               
               1-105, gnl|canFam2|chr20 (45052960-45052824)
               

               
               1-105, gnl|dasNov1|scaffold_184789 (137-4)
               

               
               1-105, gnl|echTel1|scaffold_231462 (6194-6331)
               

               
               1-105, gnl|hg17|chr3 (46726029-46726177)
               

               
               1-105, gnl|Hg17|chr3 (46726098-46726195)
               

               
               1-105, gnl|loxAfr1|scaffold_24408 (23051-23195)
               

               
               1-105, gnl|mm7|chr9 (110564702-110564569)
               

               
               1-105, gnl|Mm7|chr9 (110564643-110564542)
               

               
               1-105, gnl|monDom2|scaffold_5 (80642211-80642336)
               

               
               1-105, gnl|oryCun1|scaffold_204945 (5459-5596)
               

               
               1-105, gnl|panTro1|chr2 (48165926-48166068)
               

               
               1-105, gnl|rheMac2|chr2 (89813311-89813169)
               

               
               1-105, gnl|rn3|chr8 (115274925-115274790)
               


               
               106-620, gnl|bosTau2|chr22 (41219504-41220019)
               

               
               106-620, gnl|Hg17|chr3 (46726238-46726767)
               

               
               106-620, gnl|Mm7|chr9 (110564500-110564054)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-105, gnl\|bosTau2\|chr22 (41219356-41219461)
	1-105, gnl\|canFam2\|chr20 (45052960-45052824)
	1-105, gnl\|dasNov1\|scaffold_184789 (137-4)
	1-105, gnl\|echTel1\|scaffold_231462 (6194-6331)
	1-105, gnl\|hg17\|chr3 (46726029-46726177)
	1-105, gnl\|Hg17\|chr3 (46726098-46726195)
	1-105, gnl\|loxAfr1\|scaffold_24408 (23051-23195)
	1-105, gnl\|mm7\|chr9 (110564702-110564569)
	1-105, gnl\|Mm7\|chr9 (110564643-110564542)
	1-105, gnl\|monDom2\|scaffold_5 (80642211-80642336)
	1-105, gnl\|oryCun1\|scaffold_204945 (5459-5596)
	1-105, gnl\|panTro1\|chr2 (48165926-48166068)
	1-105, gnl\|rheMac2\|chr2 (89813311-89813169)
	1-105, gnl\|rn3\|chr8 (115274925-115274790)

	106-620, gnl\|bosTau2\|chr22 (41219504-41220019)
	106-620, gnl\|Hg17\|chr3 (46726238-46726767)
	106-620, gnl\|Mm7\|chr9 (110564500-110564054)