Non-Coding RNA Search

rpgl20_h4.y1

Sequence:


               
               AAGACAAGCTAATATCCCTCTTCAGGTCCACAATCAACTGCCCTTGAACACATCCTGCAA
AAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGCTGTCATCCTGGC
CATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGAGTTTACAATGCA
GGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCTGGGTGCCCCAAT
CTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGCGAGGTCCAAGAA
GACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGTGGCCAAAGCATT
TACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGAATGCCACTGCAG
TACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTGATGACTGCTGAT
TTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGATAAAATCCTCGC
TTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGCTTTATTGCTTTT
CTCTTTATCCTACAATATAATCGGCAGTCTCGCTCTTTTCATTTGGAACGAAATGCAGCA
TTTAGCATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACAAGCTAATATCCCTCTTCAGGTCCACAATCAACTGCCCTTGAACACATCCTGCAA
AAAATCCAGAGGAAGAAGAGCCATGGATTACTACAGAAAATATGCAGCTGTCATCCTGGC
CATATTGTCTGTGTTTCTGCAAATTCTCCATTCCTTTCCTGATGGAGAGTTTACAATGCA
GGGCTGCCCAGAATGCAAGCTAAAGGAAAACAAGTACTTCTCCAAGCTGGGTGCCCCAAT
CTATCAGTGCATGGGCTGCTGCTTCTCCAGAGCGTACCCAACTCCAGCGAGGTCCAAGAA
GACAATGTTGGTTCCAAAGAACATCACCTCGGAAGCCACATGCTGTGTGGCCAAAGCATT
TACCAAGGCCACAGTAATGGGAAATGCCAGAGTGGAGAACCACACCGAATGCCACTGCAG
TACTTGTTATTATCACAAATCTTAAATATTTTGCAGAGGGCCTTGTTGATGACTGCTGAT
TTCTCAGAATGAAAAATTAATTTGTTCAGTGTCTATGGCTTTGGGAGATAAAATCCTCGC
TTTTCTTTACCATACCATCTTTTACACGCTTTAAGAATGTGCTGCAGCTTTATTGCTTTT
CTCTTTATCCTACAATATAATCGGCAGTCTCGCTCTTTTCATTTGGAACGAAATGCAGCA
TTTAGCATGAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|217699|dbj|BAA00664.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|217699|dbj|BAA00664.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               74-183, - strand, RNAz p=0.709213
               

               
               77-183, - strand, RNAz p=0.770081

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-183, - strand, RNAz p=0.709213
               

               
               77-183, - strand, RNAz p=0.770081

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               74-183, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               74-183, gnl|canFam2|chr12 (49613806-49614054)
               

               
               74-183, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               74-183, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               74-183, gnl|galGal2|chr3 (74941271-74940984)
               

               
               74-183, gnl|hg17|chr6 (87854417-87854661)
               

               
               74-183, gnl|Hg17|chr6 (87854646-87854549)
               

               
               74-183, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               74-183, gnl|mm7|chr4 (35042915-35042665)
               

               
               74-183, gnl|Mm7|chr4 (35042677-35042786)
               

               
               74-183, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               74-183, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               74-183, gnl|panTro1|chr5 (89558008-89558252)
               

               
               74-183, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               74-183, gnl|rn3|chr5 (51547978-51547724)
               

               
               74-183, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               366-671, gnl|bosTau2|chr9 (35161493-35161796)
               

               
               366-671, gnl|Hg17|chr6 (87852272-87851972)
               

               
               366-671, gnl|Mm7|chr4 (35045743-35046013)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-183, gnl|bosTau2|chr9 (35159479-35159588)
               

               
               74-183, gnl|canFam2|chr12 (49613806-49614054)
               

               
               74-183, gnl|dasNov1|scaffold_13540 (18702-18448)
               

               
               74-183, gnl|echTel1|scaffold_314385 (36768-37022)
               

               
               74-183, gnl|galGal2|chr3 (74941271-74940984)
               

               
               74-183, gnl|hg17|chr6 (87854417-87854661)
               

               
               74-183, gnl|Hg17|chr6 (87854646-87854549)
               

               
               74-183, gnl|loxAfr1|scaffold_12882 (14626-14873)
               

               
               74-183, gnl|mm7|chr4 (35042915-35042665)
               

               
               74-183, gnl|Mm7|chr4 (35042677-35042786)
               

               
               74-183, gnl|monDom2|scaffold_0 (142157677-142157424)
               

               
               74-183, gnl|oryCun1|scaffold_198549 (4444-4688)
               

               
               74-183, gnl|panTro1|chr5 (89558008-89558252)
               

               
               74-183, gnl|rheMac2|chr4 (83036153-83036407)
               

               
               74-183, gnl|rn3|chr5 (51547978-51547724)
               

               
               74-183, gnl|xenTro1|scaffold_73 (1023414-1023201)
               


               
               366-671, gnl|bosTau2|chr9 (35161493-35161796)
               

               
               366-671, gnl|Hg17|chr6 (87852272-87851972)
               

               
               366-671, gnl|Mm7|chr4 (35045743-35046013)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	74-183, - strand, RNAz p=0.709213
	77-183, - strand, RNAz p=0.770081

	74-183, gnl\|bosTau2\|chr9 (35159479-35159588)
	74-183, gnl\|canFam2\|chr12 (49613806-49614054)
	74-183, gnl\|dasNov1\|scaffold_13540 (18702-18448)
	74-183, gnl\|echTel1\|scaffold_314385 (36768-37022)
	74-183, gnl\|galGal2\|chr3 (74941271-74940984)
	74-183, gnl\|hg17\|chr6 (87854417-87854661)
	74-183, gnl\|Hg17\|chr6 (87854646-87854549)
	74-183, gnl\|loxAfr1\|scaffold_12882 (14626-14873)
	74-183, gnl\|mm7\|chr4 (35042915-35042665)
	74-183, gnl\|Mm7\|chr4 (35042677-35042786)
	74-183, gnl\|monDom2\|scaffold_0 (142157677-142157424)
	74-183, gnl\|oryCun1\|scaffold_198549 (4444-4688)
	74-183, gnl\|panTro1\|chr5 (89558008-89558252)
	74-183, gnl\|rheMac2\|chr4 (83036153-83036407)
	74-183, gnl\|rn3\|chr5 (51547978-51547724)
	74-183, gnl\|xenTro1\|scaffold_73 (1023414-1023201)

	366-671, gnl\|bosTau2\|chr9 (35161493-35161796)
	366-671, gnl\|Hg17\|chr6 (87852272-87851972)
	366-671, gnl\|Mm7\|chr4 (35045743-35046013)