Non-Coding RNA Search

rpgl20_i16.y1

Sequence:


               
               AGAACACAAAGTGAGAAGTTTGTGCTTGAAAGAGTTCAGAAAGAGAACACTATGTGCAAA
GACCATTTGAGGCCCCAGCATGGTGAAACTGGATTCTGGAGGAATCTTGGAATGGATGGT
TTGGGTTTACCGCACGTTGAGACCTCAGACTGAAGCCTGCTTCAAGGGTGAAGAGAAGAG
GGAAAGTAAGGATTTGGTGAGTGGCTCAAAAAGGACTGGAGGGCAAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACACAAAGTGAGAAGTTTGTGCTTGAAAGAGTTCAGAAAGAGAACACTATGTGCAAA
GACCATTTGAGGCCCCAGCATGGTGAAACTGGATTCTGGAGGAATCTTGGAATGGATGGT
TTGGGTTTACCGCACGTTGAGACCTCAGACTGAAGCCTGCTTCAAGGGTGAAGAGAAGAG
GGAAAGTAAGGATTTGGTGAGTGGCTCAAAAAGGACTGGAGGGCAAGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-104, + strand, RNAz p=0.549378

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-104, + strand, RNAz p=0.549378

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-226, gnl|bosTau2|chr26 (13319495-13319717)
               

               
               1-226, gnl|canFam2|chr28 (16590920-16591894)
               

               
               1-226, gnl|dasNov1|scaffold_53472 (6489-7437)
               

               
               1-226, gnl|echTel1|scaffold_322697 (38954-39917)
               

               
               1-226, gnl|hg17|chr10 (102650541-102651518)
               

               
               1-226, gnl|Hg17|chr10 (102651186-102651411)
               

               
               1-226, gnl|loxAfr1|scaffold_28700 (34055-35080)
               

               
               1-226, gnl|mm7|chr19 (44815052-44815980)
               

               
               1-226, gnl|Mm7|chr19 (44815661-44815871)
               

               
               1-226, gnl|oryCun1|scaffold_211698 (72784-73712)
               

               
               1-226, gnl|panTro1|chr8 (104396674-104397651)
               

               
               1-226, gnl|rheMac2|chr9 (100511394-100512407)
               

               
               1-226, gnl|rn3|chr1 (250237784-250238756)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-226, gnl|bosTau2|chr26 (13319495-13319717)
               

               
               1-226, gnl|canFam2|chr28 (16590920-16591894)
               

               
               1-226, gnl|dasNov1|scaffold_53472 (6489-7437)
               

               
               1-226, gnl|echTel1|scaffold_322697 (38954-39917)
               

               
               1-226, gnl|hg17|chr10 (102650541-102651518)
               

               
               1-226, gnl|Hg17|chr10 (102651186-102651411)
               

               
               1-226, gnl|loxAfr1|scaffold_28700 (34055-35080)
               

               
               1-226, gnl|mm7|chr19 (44815052-44815980)
               

               
               1-226, gnl|Mm7|chr19 (44815661-44815871)
               

               
               1-226, gnl|oryCun1|scaffold_211698 (72784-73712)
               

               
               1-226, gnl|panTro1|chr8 (104396674-104397651)
               

               
               1-226, gnl|rheMac2|chr9 (100511394-100512407)
               

               
               1-226, gnl|rn3|chr1 (250237784-250238756)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-226, gnl\|bosTau2\|chr26 (13319495-13319717)
	1-226, gnl\|canFam2\|chr28 (16590920-16591894)
	1-226, gnl\|dasNov1\|scaffold_53472 (6489-7437)
	1-226, gnl\|echTel1\|scaffold_322697 (38954-39917)
	1-226, gnl\|hg17\|chr10 (102650541-102651518)
	1-226, gnl\|Hg17\|chr10 (102651186-102651411)
	1-226, gnl\|loxAfr1\|scaffold_28700 (34055-35080)
	1-226, gnl\|mm7\|chr19 (44815052-44815980)
	1-226, gnl\|Mm7\|chr19 (44815661-44815871)
	1-226, gnl\|oryCun1\|scaffold_211698 (72784-73712)
	1-226, gnl\|panTro1\|chr8 (104396674-104397651)
	1-226, gnl\|rheMac2\|chr9 (100511394-100512407)
	1-226, gnl\|rn3\|chr1 (250237784-250238756)