Non-Coding RNA Search

rpgl21_j2.y1

Sequence:


               
               AAAAGGCCCCTGTGTTTTCAAGCCCTTGGCATCCCTCTTGCCATGTCAATCCATTGCTTT
GTCTCCAGCCTTCATCTTTGAAGAAAGTGGATACTTCAGGTCCATTTGTGGGAGACAAGG
TTACTGAATTTGATTTATGATACTTACGTTCAAGTTAATGTTCTCCTTCCCTTTGCCCCC
CCCCAAAAGATTGTGGTTCAAGTAGATCCAATTTTCTCATTTGACTCCAATGTCTCTTAT
GGTGATGGACGTTTAAATTAAGCAAGTCATTTGTAAAGTACTGTTTAAGCACCAAATCTG
TAAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGCCCCTGTGTTTTCAAGCCCTTGGCATCCCTCTTGCCATGTCAATCCATTGCTTT
GTCTCCAGCCTTCATCTTTGAAGAAAGTGGATACTTCAGGTCCATTTGTGGGAGACAAGG
TTACTGAATTTGATTTATGATACTTACGTTCAAGTTAATGTTCTCCTTCCCTTTGCCCCC
CCCCAAAAGATTGTGGTTCAAGTAGATCCAATTTTCTCATTTGACTCCAATGTCTCTTAT
GGTGATGGACGTTTAAATTAAGCAAGTCATTTGTAAAGTACTGTTTAAGCACCAAATCTG
TAAAGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-158, - strand, RNAz p=0.996721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, - strand, RNAz p=0.996721

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-307, gnl|bosTau2|chr18 (47109951-47109652)
               

               
               1-307, gnl|canFam2|chr1 (111741248-111740844)
               

               
               1-307, gnl|echTel1|scaffold_234239 (3722-3311)
               

               
               1-307, gnl|hg17|chr19 (52305086-52305470)
               

               
               1-307, gnl|Hg17|chr19 (52305488-52305184)
               

               
               1-307, gnl|loxAfr1|scaffold_2274 (86104-85721)
               

               
               1-307, gnl|mm7|chr7 (14165445-14165073)
               

               
               1-307, gnl|Mm7|chr7 (14165052-14165348)
               

               
               1-307, gnl|monDom2|scaffold_149 (1477340-1476932)
               

               
               1-307, gnl|oryCun1|scaffold_208744 (4764-4378)
               

               
               1-307, gnl|panTro1|chr20 (49614124-49614508)
               

               
               1-307, gnl|rheMac2|chr19 (53438650-53439035)
               

               
               1-307, gnl|rn3|chr1 (76739600-76739220)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-307, gnl|bosTau2|chr18 (47109951-47109652)
               

               
               1-307, gnl|canFam2|chr1 (111741248-111740844)
               

               
               1-307, gnl|echTel1|scaffold_234239 (3722-3311)
               

               
               1-307, gnl|hg17|chr19 (52305086-52305470)
               

               
               1-307, gnl|Hg17|chr19 (52305488-52305184)
               

               
               1-307, gnl|loxAfr1|scaffold_2274 (86104-85721)
               

               
               1-307, gnl|mm7|chr7 (14165445-14165073)
               

               
               1-307, gnl|Mm7|chr7 (14165052-14165348)
               

               
               1-307, gnl|monDom2|scaffold_149 (1477340-1476932)
               

               
               1-307, gnl|oryCun1|scaffold_208744 (4764-4378)
               

               
               1-307, gnl|panTro1|chr20 (49614124-49614508)
               

               
               1-307, gnl|rheMac2|chr19 (53438650-53439035)
               

               
               1-307, gnl|rn3|chr1 (76739600-76739220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-307, gnl\|bosTau2\|chr18 (47109951-47109652)
	1-307, gnl\|canFam2\|chr1 (111741248-111740844)
	1-307, gnl\|echTel1\|scaffold_234239 (3722-3311)
	1-307, gnl\|hg17\|chr19 (52305086-52305470)
	1-307, gnl\|Hg17\|chr19 (52305488-52305184)
	1-307, gnl\|loxAfr1\|scaffold_2274 (86104-85721)
	1-307, gnl\|mm7\|chr7 (14165445-14165073)
	1-307, gnl\|Mm7\|chr7 (14165052-14165348)
	1-307, gnl\|monDom2\|scaffold_149 (1477340-1476932)
	1-307, gnl\|oryCun1\|scaffold_208744 (4764-4378)
	1-307, gnl\|panTro1\|chr20 (49614124-49614508)
	1-307, gnl\|rheMac2\|chr19 (53438650-53439035)
	1-307, gnl\|rn3\|chr1 (76739600-76739220)