Non-Coding RNA Search

rpgl22_i18.y1

Sequence:


               
               GGGGGAGGCCATGGCCTCGGCAGAGTTGCAGGGAAGTACCAGAAGCTGGCTCAGGAGTAC
TCGAAGCTTCGTGCTCAGAATCAGGTCTTGAAGAAAGGTGTTGTTGATGAACAAGCGAAT
TCTGCTGCTTTGAAGGAACAACTGAAAATGAAGGATCAATCCCTGAGGAAGCTGCAGCAG
GAAATGGATAGTTTGACATTCCGAAATCTGCAGCTTGCCAAGAGGGTAGAGCTACTTCAG
GATGAACTGGCTTTAAGTGAAAACCCCGGAAAGGGCAAGAAAAACAAGGATTGTTTGAGA
ATGGTGAACACGTAGAAGAGACAAGCTTCTAAGGTGATAGAGAATCTGTGTACCTTAGGA
TGTTTCTCTAAAGGATGAAAGTTATGTGGACATAACTTATTCTTTCCATCAGAAAAGTGG
AGAATCTTCTCAGTTGAGTCAAGAGCAGAAGAGTGTCTTTGATGAAGACCTTCAAAAGAA
GATAGAAGAGAATGAACGGTTGCATATACAATTTTTTGAAGCTGATGAGCAGCACAAGCA
TGTGGAAGCAGAGCTGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGAGGCCATGGCCTCGGCAGAGTTGCAGGGAAGTACCAGAAGCTGGCTCAGGAGTAC
TCGAAGCTTCGTGCTCAGAATCAGGTCTTGAAGAAAGGTGTTGTTGATGAACAAGCGAAT
TCTGCTGCTTTGAAGGAACAACTGAAAATGAAGGATCAATCCCTGAGGAAGCTGCAGCAG
GAAATGGATAGTTTGACATTCCGAAATCTGCAGCTTGCCAAGAGGGTAGAGCTACTTCAG
GATGAACTGGCTTTAAGTGAAAACCCCGGAAAGGGCAAGAAAAACAAGGATTGTTTGAGA
ATGGTGAACACGTAGAAGAGACAAGCTTCTAAGGTGATAGAGAATCTGTGTACCTTAGGA
TGTTTCTCTAAAGGATGAAAGTTATGTGGACATAACTTATTCTTTCCATCAGAAAAGTGG
AGAATCTTCTCAGTTGAGTCAAGAGCAGAAGAGTGTCTTTGATGAAGACCTTCAAAAGAA
GATAGAAGAGAATGAACGGTTGCATATACAATTTTTTGAAGCTGATGAGCAGCACAAGCA
TGTGGAAGCAGAGCTGAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-289, + strand, RNAz p=0.980001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-289, + strand, RNAz p=0.980001

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK172762, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK172762, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               131-289, gnl|bosTau2|chr11 (24560295-24560143)
               

               
               131-289, gnl|Hg17|chr2 (48593380-48593532)
               

               
               131-289, gnl|Mm7|chr17 (86851885-86852037)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-289, gnl|bosTau2|chr11 (24560295-24560143)
               

               
               131-289, gnl|Hg17|chr2 (48593380-48593532)
               

               
               131-289, gnl|Mm7|chr17 (86851885-86852037)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	131-289, gnl\|bosTau2\|chr11 (24560295-24560143)
	131-289, gnl\|Hg17\|chr2 (48593380-48593532)
	131-289, gnl\|Mm7\|chr17 (86851885-86852037)