Non-Coding RNA Search

rpgl22_j17.y1

Sequence:


               
               GTGACCCAGGAGGGGAAGGCATCCAATAAGAGGTGGTTATCAAGCCAGCTACCACAGTGG
GTGAGTGAGGCTTAATTCTGCAGGCAGTCTTGGGAAATGGGGTAAATGCACATCTCAGAA
TTCCCCTGGCCGAGGGCACTGGAGCTGGTGTATTTATATCCCAGCACCTGGCAGACATTG
GTGAAGAGCTGGCCCATGGGGTTGTGTGTTAATTCCCTGGCATTTCTAGCTCATAATGCA
TGTTGACAAAACGGGTTCCAGAGCCCAGGGACAGCTCTTTGACGAGGACACAGGTACTGG
CTGTAAGGAGCCCTGCTGTTGCGCACAGAAATAAATGGTAATGTCATCTGAAGGGATGGG
GTCAGAGCTCTGGTCATGTCTGCTCTGTGGGCACCGTCGGCCTCTTTTCATCTGCGCCCT
TTACCACTCTCCAACCACTTTTGTTCATGGGGACTCACTGATAAAAACGTTTAAAAATGA
AAAATTCggagttcccgttgtggcgcagtggttaacgaatccgactaggaaccatgaggt
tgcgggttcggtccctgcc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCCAGGAGGGGAAGGCATCCAATAAGAGGTGGTTATCAAGCCAGCTACCACAGTGG
GTGAGTGAGGCTTAATTCTGCAGGCAGTCTTGGGAAATGGGGTAAATGCACATCTCAGAA
TTCCCCTGGCCGAGGGCACTGGAGCTGGTGTATTTATATCCCAGCACCTGGCAGACATTG
GTGAAGAGCTGGCCCATGGGGTTGTGTGTTAATTCCCTGGCATTTCTAGCTCATAATGCA
TGTTGACAAAACGGGTTCCAGAGCCCAGGGACAGCTCTTTGACGAGGACACAGGTACTGG
CTGTAAGGAGCCCTGCTGTTGCGCACAGAAATAAATGGTAATGTCATCTGAAGGGATGGG
GTCAGAGCTCTGGTCATGTCTGCTCTGTGGGCACCGTCGGCCTCTTTTCATCTGCGCCCT
TTACCACTCTCCAACCACTTTTGTTCATGGGGACTCACTGATAAAAACGTTTAAAAATGA
AAAATTCggagttcccgttgtggcgcagtggttaacgaatccgactaggaaccatgaggt
tgcgggttcggtccctgcc

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               203-293, - strand, RNAz p=0.998957
               

               
               297-412, + strand, RNAz p=0.628267

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-293, - strand, RNAz p=0.998957
               

               
               297-412, + strand, RNAz p=0.628267

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-293, gnl|bosTau2|chr7 (26244647-26244932)
               

               
               1-293, gnl|canFam2|chr4 (39917468-39917134)
               

               
               1-293, gnl|dasNov1|scaffold_23993 (5956-5645)
               

               
               1-293, gnl|echTel1|scaffold_306510 (41554-41890)
               

               
               1-293, gnl|hg17|chr5 (175972438-175972773)
               

               
               1-293, gnl|Hg17|chr5 (175972460-175972761)
               

               
               1-293, gnl|mm7|chr13 (53834324-53834572)
               

               
               1-293, gnl|panTro1|chr4 (183426972-183427334)
               

               
               1-293, gnl|rheMac2|chr6 (173100491-173100832)
               

               
               1-293, gnl|rn3|chr17 (15922317-15922069)
               


               
               297-487, gnl|bosTau2|chr7 (26246023-26246213)
               

               
               297-487, gnl|canFam2|chr4 (39917133-39916898)
               

               
               297-487, gnl|dasNov1|scaffold_23993 (5644-5429)
               

               
               297-487, gnl|echTel1|scaffold_306510 (41892-42091)
               

               
               297-487, gnl|hg17|chr5 (175972774-175973011)
               

               
               297-487, gnl|Hg17|chr5 (175972773-175972951)
               

               
               297-487, gnl|mm7|chr13 (53834573-53834766)
               

               
               297-487, gnl|panTro1|chr4 (183427335-183427572)
               

               
               297-487, gnl|rheMac2|chr6 (173100833-173101067)
               

               
               297-487, gnl|rn3|chr17 (15922068-15921876)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr7 (26244647-26244932)
               

               
               1-293, gnl|canFam2|chr4 (39917468-39917134)
               

               
               1-293, gnl|dasNov1|scaffold_23993 (5956-5645)
               

               
               1-293, gnl|echTel1|scaffold_306510 (41554-41890)
               

               
               1-293, gnl|hg17|chr5 (175972438-175972773)
               

               
               1-293, gnl|Hg17|chr5 (175972460-175972761)
               

               
               1-293, gnl|mm7|chr13 (53834324-53834572)
               

               
               1-293, gnl|panTro1|chr4 (183426972-183427334)
               

               
               1-293, gnl|rheMac2|chr6 (173100491-173100832)
               

               
               1-293, gnl|rn3|chr17 (15922317-15922069)
               


               
               297-487, gnl|bosTau2|chr7 (26246023-26246213)
               

               
               297-487, gnl|canFam2|chr4 (39917133-39916898)
               

               
               297-487, gnl|dasNov1|scaffold_23993 (5644-5429)
               

               
               297-487, gnl|echTel1|scaffold_306510 (41892-42091)
               

               
               297-487, gnl|hg17|chr5 (175972774-175973011)
               

               
               297-487, gnl|Hg17|chr5 (175972773-175972951)
               

               
               297-487, gnl|mm7|chr13 (53834573-53834766)
               

               
               297-487, gnl|panTro1|chr4 (183427335-183427572)
               

               
               297-487, gnl|rheMac2|chr6 (173100833-173101067)
               

               
               297-487, gnl|rn3|chr17 (15922068-15921876)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	203-293, - strand, RNAz p=0.998957
	297-412, + strand, RNAz p=0.628267

	1-293, gnl\|bosTau2\|chr7 (26244647-26244932)
	1-293, gnl\|canFam2\|chr4 (39917468-39917134)
	1-293, gnl\|dasNov1\|scaffold_23993 (5956-5645)
	1-293, gnl\|echTel1\|scaffold_306510 (41554-41890)
	1-293, gnl\|hg17\|chr5 (175972438-175972773)
	1-293, gnl\|Hg17\|chr5 (175972460-175972761)
	1-293, gnl\|mm7\|chr13 (53834324-53834572)
	1-293, gnl\|panTro1\|chr4 (183426972-183427334)
	1-293, gnl\|rheMac2\|chr6 (173100491-173100832)
	1-293, gnl\|rn3\|chr17 (15922317-15922069)

	297-487, gnl\|bosTau2\|chr7 (26246023-26246213)
	297-487, gnl\|canFam2\|chr4 (39917133-39916898)
	297-487, gnl\|dasNov1\|scaffold_23993 (5644-5429)
	297-487, gnl\|echTel1\|scaffold_306510 (41892-42091)
	297-487, gnl\|hg17\|chr5 (175972774-175973011)
	297-487, gnl\|Hg17\|chr5 (175972773-175972951)
	297-487, gnl\|mm7\|chr13 (53834573-53834766)
	297-487, gnl\|panTro1\|chr4 (183427335-183427572)
	297-487, gnl\|rheMac2\|chr6 (173100833-173101067)
	297-487, gnl\|rn3\|chr17 (15922068-15921876)