Non-Coding RNA Search

rpgl25_d20.y1

Sequence:


               
               GGCTGAAGAAATTCTTCATGGAATGCAATTGCACGTATCTCATTTCGGTTATCTGAAGTC
TTAGGCATTTAATTTCCAAACTTAACATTCCCGCCATCCCAAAGACAGAAGGTATTTTGT
AATTTCGAAAAAGGCGGGGTGATGTTCAACGGTTCACATTAAAGCTCCAGAGGAACGTAG
CTCTCAGTAAACCCATTCTGGTAGAAAAACAGTCCAAGAGGCAAAGCCGTGTTTCTCCTC
CCAAGAGCTGCTCTTCTGCTGAATTTCATTTACCTCCCCTGCAGAGAAACAGCCGTTCAC
CAGTGATGCTTCCAGAATATTCTCAAGAGCTCACTGCAGTGTAATAGTTGCTCAAGGGTG
TGCCCTTACAGGAATTCCCACTTCTTAAGAGCCTTGTTGGTGTAGGAATGCATTTCTGGA
AGATGGCATATTCCTGATGTTGATGCCTTCCAAAGGAAAACACACTTAGAATGCTTTAAA
GTAAAATAGCTGAGGATATTTTTTCCTGAGCTTGAATCGTTGCTTAACCGTTCCATGAAT
TTAGTTATTCCTGTAAAACAACCCAAATCTTGGGACACTTTGAAGGGCTGCCACAAATTT
CATAGTTTCCTAAGACTGCTAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGAAGAAATTCTTCATGGAATGCAATTGCACGTATCTCATTTCGGTTATCTGAAGTC
TTAGGCATTTAATTTCCAAACTTAACATTCCCGCCATCCCAAAGACAGAAGGTATTTTGT
AATTTCGAAAAAGGCGGGGTGATGTTCAACGGTTCACATTAAAGCTCCAGAGGAACGTAG
CTCTCAGTAAACCCATTCTGGTAGAAAAACAGTCCAAGAGGCAAAGCCGTGTTTCTCCTC
CCAAGAGCTGCTCTTCTGCTGAATTTCATTTACCTCCCCTGCAGAGAAACAGCCGTTCAC
CAGTGATGCTTCCAGAATATTCTCAAGAGCTCACTGCAGTGTAATAGTTGCTCAAGGGTG
TGCCCTTACAGGAATTCCCACTTCTTAAGAGCCTTGTTGGTGTAGGAATGCATTTCTGGA
AGATGGCATATTCCTGATGTTGATGCCTTCCAAAGGAAAACACACTTAGAATGCTTTAAA
GTAAAATAGCTGAGGATATTTTTTCCTGAGCTTGAATCGTTGCTTAACCGTTCCATGAAT
TTAGTTATTCCTGTAAAACAACCCAAATCTTGGGACACTTTGAAGGGCTGCCACAAATTT
CATAGTTTCCTAAGACTGCTAAATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-459, + strand, RNAz p=0.978698

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-459, + strand, RNAz p=0.978698

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-622, gnl|bosTau2|chr3 (61518429-61517795)
               

               
               1-622, gnl|Hg17|chr1 (53636912-53636161)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-622, gnl|bosTau2|chr3 (61518429-61517795)
               

               
               1-622, gnl|Hg17|chr1 (53636912-53636161)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-622, gnl\|bosTau2\|chr3 (61518429-61517795)
	1-622, gnl\|Hg17\|chr1 (53636912-53636161)