Non-Coding RNA Search

rpgl26_m22.y1

Sequence:


               
               TCGGATTTTTACCTTTCGTTTGTAATTCCTACACACTTTGGGAGTTGTTCTCGGGGTTGT
CCAGCCCCAACACTTTGAACTGTAGTCTGGATGTGGTGCTCAAGGAGGGCGGTGAGATGA
CCACTTGCAGGCAGTGCATCGAGGCTTACCAAGACTATGACCACCACGCTCAGGAGAAAT
ACGAAGAGTTTGAAAGCGTGCTCCATAAATACTTACAATCGGAGGAGTACTCGGTGAAAT
CCTGCCCTGAGGACTGTAAGATTGTCTACAAAGCCTGGCTGTGTTCCCAGTACTTTGAAG
TCGCACAGCTTAACTGCAGAAAGACAATTCCTTGCAAGCAATACTGTTTGGAGGTTCAGA
CGAGATGTCCGTTCATATTGCCCGACAATGACGAAGTCATCTACGGGGGACTCTCCAGTT
TCATCTGTACAGGGCTCTACGAAACCTTCCTAACCAATGATGAACCAGAATGCTGTGACG
TCAGGAGAGAAGCAACACCCCGCAACCCCTCCGCTGGGCGGGTGGACAGAGGCGGCCCCT
GCCCCAGGACGTCGCCCCCAGCCTCCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGATTTTTACCTTTCGTTTGTAATTCCTACACACTTTGGGAGTTGTTCTCGGGGTTGT
CCAGCCCCAACACTTTGAACTGTAGTCTGGATGTGGTGCTCAAGGAGGGCGGTGAGATGA
CCACTTGCAGGCAGTGCATCGAGGCTTACCAAGACTATGACCACCACGCTCAGGAGAAAT
ACGAAGAGTTTGAAAGCGTGCTCCATAAATACTTACAATCGGAGGAGTACTCGGTGAAAT
CCTGCCCTGAGGACTGTAAGATTGTCTACAAAGCCTGGCTGTGTTCCCAGTACTTTGAAG
TCGCACAGCTTAACTGCAGAAAGACAATTCCTTGCAAGCAATACTGTTTGGAGGTTCAGA
CGAGATGTCCGTTCATATTGCCCGACAATGACGAAGTCATCTACGGGGGACTCTCCAGTT
TCATCTGTACAGGGCTCTACGAAACCTTCCTAACCAATGATGAACCAGAATGCTGTGACG
TCAGGAGAGAAGCAACACCCCGCAACCCCTCCGCTGGGCGGGTGGACAGAGGCGGCCCCT
GCCCCAGGACGTCGCCCCCAGCCTCCTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55730055|emb|CAH91752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55730055|emb|CAH91752.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-418, - strand, RNAz p=0.663787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-418, - strand, RNAz p=0.663787

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               259-433, gnl|bosTau2|chr12 (44110945-44110771)
               

               
               259-433, gnl|canFam2|chr22 (59119288-59119523)
               

               
               259-433, gnl|danRer3|chrNA (39428224-39428442)
               

               
               259-433, gnl|dasNov1|scaffold_11761 (45334-45571)
               

               
               259-433, gnl|echTel1|scaffold_310996 (9891-10127)
               

               
               259-433, gnl|fr1|chrUn (311525380-311525586)
               

               
               259-433, gnl|galGal2|chr1 (133562284-133562062)
               

               
               259-433, gnl|hg17|chr13 (106660912-106661150)
               

               
               259-433, gnl|Hg17|chr13 (106661106-106660932)
               

               
               259-433, gnl|loxAfr1|scaffold_6173 (25317-25552)
               

               
               259-433, gnl|mm7|chr8 (9202799-9203044)
               

               
               259-433, gnl|Mm7|chr8 (9202992-9202818)
               

               
               259-433, gnl|monDom2|scaffold_11 (41640497-41640266)
               

               
               259-433, gnl|oryCun1|scaffold_214203 (17425-17628)
               

               
               259-433, gnl|panTro1|chr14 (90064874-90065112)
               

               
               259-433, gnl|rheMac2|chr17 (87416153-87416389)
               

               
               259-433, gnl|rn3|chrX (87918495-87918294)
               

               
               259-433, gnl|tetNig1|chr2 (9658304-9658118)
               

               
               259-433, gnl|xenTro1|scaffold_77 (973070-972859)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               259-433, gnl|bosTau2|chr12 (44110945-44110771)
               

               
               259-433, gnl|canFam2|chr22 (59119288-59119523)
               

               
               259-433, gnl|danRer3|chrNA (39428224-39428442)
               

               
               259-433, gnl|dasNov1|scaffold_11761 (45334-45571)
               

               
               259-433, gnl|echTel1|scaffold_310996 (9891-10127)
               

               
               259-433, gnl|fr1|chrUn (311525380-311525586)
               

               
               259-433, gnl|galGal2|chr1 (133562284-133562062)
               

               
               259-433, gnl|hg17|chr13 (106660912-106661150)
               

               
               259-433, gnl|Hg17|chr13 (106661106-106660932)
               

               
               259-433, gnl|loxAfr1|scaffold_6173 (25317-25552)
               

               
               259-433, gnl|mm7|chr8 (9202799-9203044)
               

               
               259-433, gnl|Mm7|chr8 (9202992-9202818)
               

               
               259-433, gnl|monDom2|scaffold_11 (41640497-41640266)
               

               
               259-433, gnl|oryCun1|scaffold_214203 (17425-17628)
               

               
               259-433, gnl|panTro1|chr14 (90064874-90065112)
               

               
               259-433, gnl|rheMac2|chr17 (87416153-87416389)
               

               
               259-433, gnl|rn3|chrX (87918495-87918294)
               

               
               259-433, gnl|tetNig1|chr2 (9658304-9658118)
               

               
               259-433, gnl|xenTro1|scaffold_77 (973070-972859)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	259-433, gnl\|bosTau2\|chr12 (44110945-44110771)
	259-433, gnl\|canFam2\|chr22 (59119288-59119523)
	259-433, gnl\|danRer3\|chrNA (39428224-39428442)
	259-433, gnl\|dasNov1\|scaffold_11761 (45334-45571)
	259-433, gnl\|echTel1\|scaffold_310996 (9891-10127)
	259-433, gnl\|fr1\|chrUn (311525380-311525586)
	259-433, gnl\|galGal2\|chr1 (133562284-133562062)
	259-433, gnl\|hg17\|chr13 (106660912-106661150)
	259-433, gnl\|Hg17\|chr13 (106661106-106660932)
	259-433, gnl\|loxAfr1\|scaffold_6173 (25317-25552)
	259-433, gnl\|mm7\|chr8 (9202799-9203044)
	259-433, gnl\|Mm7\|chr8 (9202992-9202818)
	259-433, gnl\|monDom2\|scaffold_11 (41640497-41640266)
	259-433, gnl\|oryCun1\|scaffold_214203 (17425-17628)
	259-433, gnl\|panTro1\|chr14 (90064874-90065112)
	259-433, gnl\|rheMac2\|chr17 (87416153-87416389)
	259-433, gnl\|rn3\|chrX (87918495-87918294)
	259-433, gnl\|tetNig1\|chr2 (9658304-9658118)
	259-433, gnl\|xenTro1\|scaffold_77 (973070-972859)