Non-Coding RNA Search

rpgl29_b3.y1

Sequence:


               
               AAAAAAGAGAGGAGAGAGAAGATAAAAAGTTCATTGCATTCAATTTGGCCTAATTTCTTG
ATAATAGTTTCCTATTAGATTTTCTGATTAATACTGATGGCTCTTACCTAGGCTGTGATA
ATTAGGTTTTGATCTATTGTGACATTAATGATCACAATCAGTTGACTTTGAAATTGTCTT
AATTAATGGCTCTTCCCTTGTTGGCTGCCTCCAGCGCAGGTTCTCCCCCCTCCCCCAGCA
TCTTGTTTTAACTCCTTCTCTCACTGACCTCAGAGACAAATAGCATTGGAGGATCACTTT
CTTCCCATAAGCCAAGATGCTAAACTATCTTAAAATATTTCTCTGACAGAGGAGCTATAT
GAATTGATGTTAGGTGAAATGAGGATCAGGATAAAAGGCAAGAAAACAGGCTCTCAGCAA
ACAGGAAATAGTCCATCTTGGAAAACCACCACCACAGTCAAGCATGATGTTTAAGTGGCA
ACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAGAGAGGAGAGAGAAGATAAAAAGTTCATTGCATTCAATTTGGCCTAATTTCTTG
ATAATAGTTTCCTATTAGATTTTCTGATTAATACTGATGGCTCTTACCTAGGCTGTGATA
ATTAGGTTTTGATCTATTGTGACATTAATGATCACAATCAGTTGACTTTGAAATTGTCTT
AATTAATGGCTCTTCCCTTGTTGGCTGCCTCCAGCGCAGGTTCTCCCCCCTCCCCCAGCA
TCTTGTTTTAACTCCTTCTCTCACTGACCTCAGAGACAAATAGCATTGGAGGATCACTTT
CTTCCCATAAGCCAAGATGCTAAACTATCTTAAAATATTTCTCTGACAGAGGAGCTATAT
GAATTGATGTTAGGTGAAATGAGGATCAGGATAAAAGGCAAGAAAACAGGCTCTCAGCAA
ACAGGAAATAGTCCATCTTGGAAAACCACCACCACAGTCAAGCATGATGTTTAAGTGGCA
ACA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               37-156, + strand, RNAz p=0.639072
               

               
               60-179, - strand, RNAz p=0.999319
               

               
               238-357, - strand, RNAz p=0.939679

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-156, + strand, RNAz p=0.639072
               

               
               60-179, - strand, RNAz p=0.999319
               

               
               238-357, - strand, RNAz p=0.939679

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-481, gnl|bosTau2|chr5 (16568601-16568125)
               

               
               1-481, gnl|canFam2|chr27 (4055912-4055529)
               

               
               1-481, gnl|echTel1|scaffold_322533 (63693-64073)
               

               
               1-481, gnl|hg17|chr12 (52914442-52914817)
               

               
               1-481, gnl|Hg17|chr12 (52914534-52914999)
               

               
               1-481, gnl|loxAfr1|scaffold_1845 (10800-11194)
               

               
               1-481, gnl|mm7|chr15 (103182088-103182447)
               

               
               1-481, gnl|Mm7|chr15 (103182172-103182618)
               

               
               1-481, gnl|oryCun1|scaffold_203643 (199841-199470)
               

               
               1-481, gnl|panTro1|chr10 (54170021-54170396)
               

               
               1-481, gnl|rheMac2|chr11 (51336714-51337080)
               

               
               1-481, gnl|rn3|chr7 (142183008-142183365)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr5 (16568601-16568125)
               

               
               1-481, gnl|canFam2|chr27 (4055912-4055529)
               

               
               1-481, gnl|echTel1|scaffold_322533 (63693-64073)
               

               
               1-481, gnl|hg17|chr12 (52914442-52914817)
               

               
               1-481, gnl|Hg17|chr12 (52914534-52914999)
               

               
               1-481, gnl|loxAfr1|scaffold_1845 (10800-11194)
               

               
               1-481, gnl|mm7|chr15 (103182088-103182447)
               

               
               1-481, gnl|Mm7|chr15 (103182172-103182618)
               

               
               1-481, gnl|oryCun1|scaffold_203643 (199841-199470)
               

               
               1-481, gnl|panTro1|chr10 (54170021-54170396)
               

               
               1-481, gnl|rheMac2|chr11 (51336714-51337080)
               

               
               1-481, gnl|rn3|chr7 (142183008-142183365)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	37-156, + strand, RNAz p=0.639072
	60-179, - strand, RNAz p=0.999319
	238-357, - strand, RNAz p=0.939679

	1-481, gnl\|bosTau2\|chr5 (16568601-16568125)
	1-481, gnl\|canFam2\|chr27 (4055912-4055529)
	1-481, gnl\|echTel1\|scaffold_322533 (63693-64073)
	1-481, gnl\|hg17\|chr12 (52914442-52914817)
	1-481, gnl\|Hg17\|chr12 (52914534-52914999)
	1-481, gnl\|loxAfr1\|scaffold_1845 (10800-11194)
	1-481, gnl\|mm7\|chr15 (103182088-103182447)
	1-481, gnl\|Mm7\|chr15 (103182172-103182618)
	1-481, gnl\|oryCun1\|scaffold_203643 (199841-199470)
	1-481, gnl\|panTro1\|chr10 (54170021-54170396)
	1-481, gnl\|rheMac2\|chr11 (51336714-51337080)
	1-481, gnl\|rn3\|chr7 (142183008-142183365)