Non-Coding RNA Search

rpgl30_f19.y1

Sequence:


               
               GACAATAACTGCTCACCTGTCATAGTCTGGGAGTGAGTCTAGACCACACTGCATCAGGGG
AAACCGAGGCAGAGGAAATCCTTCATCATGGCCAGAAACCCATGTGCTGGGATTCCCCAG
AAAGACCTTTCCTCTCTTCCCTCATTTTCCTTCACCCTCTCCAGGCTTTCACTGTTCATA
CAAGCACAGTGCTCTGTCATTTCTTCCTATTCCAAGTTCTCTTCTGATGCTGTCAAAATA
AGAGCAATGATGATGGTGAACATTTCTAATAAGAGCAGCTACTACCTATTAAAAAACAAA
AAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAATAACTGCTCACCTGTCATAGTCTGGGAGTGAGTCTAGACCACACTGCATCAGGGG
AAACCGAGGCAGAGGAAATCCTTCATCATGGCCAGAAACCCATGTGCTGGGATTCCCCAG
AAAGACCTTTCCTCTCTTCCCTCATTTTCCTTCACCCTCTCCAGGCTTTCACTGTTCATA
CAAGCACAGTGCTCTGTCATTTCTTCCTATTCCAAGTTCTCTTCTGATGCTGTCAAAATA
AGAGCAATGATGATGGTGAACATTTCTAATAAGAGCAGCTACTACCTATTAAAAAACAAA
AAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-214, - strand, RNAz p=0.805365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-214, - strand, RNAz p=0.805365

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               4-291, gnl|bosTau2|chr7 (2070602-2070884)
               

               
               4-291, gnl|canFam2|chr20 (47455876-47455470)
               

               
               4-291, gnl|hg17|chr19 (18586390-18586773)
               

               
               4-291, gnl|Hg17|chr19 (18586578-18586886)
               

               
               4-291, gnl|loxAfr1|scaffold_113612 (54-505)
               

               
               4-291, gnl|panTro1|chr20 (19616433-19616815)
               

               
               4-291, gnl|rheMac2|chr19 (18235161-18235516)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-291, gnl|bosTau2|chr7 (2070602-2070884)
               

               
               4-291, gnl|canFam2|chr20 (47455876-47455470)
               

               
               4-291, gnl|hg17|chr19 (18586390-18586773)
               

               
               4-291, gnl|Hg17|chr19 (18586578-18586886)
               

               
               4-291, gnl|loxAfr1|scaffold_113612 (54-505)
               

               
               4-291, gnl|panTro1|chr20 (19616433-19616815)
               

               
               4-291, gnl|rheMac2|chr19 (18235161-18235516)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	4-291, gnl\|bosTau2\|chr7 (2070602-2070884)
	4-291, gnl\|canFam2\|chr20 (47455876-47455470)
	4-291, gnl\|hg17\|chr19 (18586390-18586773)
	4-291, gnl\|Hg17\|chr19 (18586578-18586886)
	4-291, gnl\|loxAfr1\|scaffold_113612 (54-505)
	4-291, gnl\|panTro1\|chr20 (19616433-19616815)
	4-291, gnl\|rheMac2\|chr19 (18235161-18235516)