Non-Coding RNA Search

rpgl31_a23.y1

Sequence:


               
               GTCTCGACAGTGTAGCCTTTCGCGTACTCGCTCTTTCTCTCTCGCTCTGCCTGAACTATG
CGCTGACTCTCTCACCGGAGTCGGCTAGCCAAGGAGAGAGGAAGACGTCTTTAAGGGCCC
CAGCCTGGGCGAGCTGGTCGCACTTCCGCCTCTCGGGCTCCGGAAGGTAGCGCGCACGCG
CTCCCTGCGACTCCGGCGCCGTTGACTTCCGCTCCCACTGTGCCCCGCGAGCCGAATCAT
GGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCGTTGGGTGGTCTTGA
TGTACGAAGACGAATTCCTATAAAGCTCATCTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCGACAGTGTAGCCTTTCGCGTACTCGCTCTTTCTCTCTCGCTCTGCCTGAACTATG
CGCTGACTCTCTCACCGGAGTCGGCTAGCCAAGGAGAGAGGAAGACGTCTTTAAGGGCCC
CAGCCTGGGCGAGCTGGTCGCACTTCCGCCTCTCGGGCTCCGGAAGGTAGCGCGCACGCG
CTCCCTGCGACTCCGGCGCCGTTGACTTCCGCTCCCACTGTGCCCCGCGAGCCGAATCAT
GGATCACACTGACAATGAGTTACAAGGCACTAATAGTTCTGGATCGTTGGGTGGTCTTGA
TGTACGAAGACGAATTCCTATAAAGCTCATCTCCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-159, - strand, RNAz p=0.908311
               

               
               54-189, - strand, RNAz p=0.94099

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-159, - strand, RNAz p=0.908311
               

               
               54-189, - strand, RNAz p=0.94099

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               32-107, + strand, RNAmicro p=0.99997

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               32-107, + strand, RNAmicro p=0.99997

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-259, gnl|bosTau2|chr4 (21094096-21094349)
               

               
               3-259, gnl|canFam2|chr18 (15854771-15853688)
               

               
               3-259, gnl|dasNov1|scaffold_5767 (16780-15584)
               

               
               3-259, gnl|echTel1|scaffold_301435 (43040-44158)
               

               
               3-259, gnl|hg17|chr7 (106978265-106979433)
               

               
               3-259, gnl|Hg17|chr7 (106978329-106978580)
               

               
               3-259, gnl|mm7|chr12 (29339754-29338695)
               

               
               3-259, gnl|Mm7|chr12 (29339704-29339468)
               

               
               3-259, gnl|monDom2|scaffold_22 (44834518-44833202)
               

               
               3-259, gnl|oryCun1|scaffold_200023 (104264-105427)
               

               
               3-259, gnl|panTro1|chr6 (108893886-108895055)
               

               
               3-259, gnl|rheMac2|chr3 (145165670-145166829)
               

               
               3-259, gnl|rn3|chr6 (49370257-49369158)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-259, gnl|bosTau2|chr4 (21094096-21094349)
               

               
               3-259, gnl|canFam2|chr18 (15854771-15853688)
               

               
               3-259, gnl|dasNov1|scaffold_5767 (16780-15584)
               

               
               3-259, gnl|echTel1|scaffold_301435 (43040-44158)
               

               
               3-259, gnl|hg17|chr7 (106978265-106979433)
               

               
               3-259, gnl|Hg17|chr7 (106978329-106978580)
               

               
               3-259, gnl|mm7|chr12 (29339754-29338695)
               

               
               3-259, gnl|Mm7|chr12 (29339704-29339468)
               

               
               3-259, gnl|monDom2|scaffold_22 (44834518-44833202)
               

               
               3-259, gnl|oryCun1|scaffold_200023 (104264-105427)
               

               
               3-259, gnl|panTro1|chr6 (108893886-108895055)
               

               
               3-259, gnl|rheMac2|chr3 (145165670-145166829)
               

               
               3-259, gnl|rn3|chr6 (49370257-49369158)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	3-159, - strand, RNAz p=0.908311
	54-189, - strand, RNAz p=0.94099

	3-259, gnl\|bosTau2\|chr4 (21094096-21094349)
	3-259, gnl\|canFam2\|chr18 (15854771-15853688)
	3-259, gnl\|dasNov1\|scaffold_5767 (16780-15584)
	3-259, gnl\|echTel1\|scaffold_301435 (43040-44158)
	3-259, gnl\|hg17\|chr7 (106978265-106979433)
	3-259, gnl\|Hg17\|chr7 (106978329-106978580)
	3-259, gnl\|mm7\|chr12 (29339754-29338695)
	3-259, gnl\|Mm7\|chr12 (29339704-29339468)
	3-259, gnl\|monDom2\|scaffold_22 (44834518-44833202)
	3-259, gnl\|oryCun1\|scaffold_200023 (104264-105427)
	3-259, gnl\|panTro1\|chr6 (108893886-108895055)
	3-259, gnl\|rheMac2\|chr3 (145165670-145166829)
	3-259, gnl\|rn3\|chr6 (49370257-49369158)