Non-Coding RNA Search

rpigca0_000292.y1

Sequence:


               
               AAAATGGTCCTGTAGGATTTGAGGTAGACATCTAGATTTGATTCTTGAATTCCCTTTTTG
TGAGCTTTATGATTTTGGGGCATGTAATTTGATTTCTCAGCTGTAAAATGGGGATGATAT
ATTCATCTCAAAGGATGGTTGTGAGGAAATAAAATATGGCACATGGTCTAATACCTAGCA
AATGCTCAAATGTTAGTTATTATTATCTGAAAGATCAAAACATCTGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGGTCCTGTAGGATTTGAGGTAGACATCTAGATTTGATTCTTGAATTCCCTTTTTG
TGAGCTTTATGATTTTGGGGCATGTAATTTGATTTCTCAGCTGTAAAATGGGGATGATAT
ATTCATCTCAAAGGATGGTTGTGAGGAAATAAAATATGGCACATGGTCTAATACCTAGCA
AATGCTCAAATGTTAGTTATTATTATCTGAAAGATCAAAACATCTGAATT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-230, gnl|bosTau2|chr25 (17931616-17931370)
               

               
               1-230, gnl|canFam2|chr6 (26628195-26627911)
               

               
               1-230, gnl|dasNov1|scaffold_16063 (42337-42629)
               

               
               1-230, gnl|hg17|chr16 (21934812-21935102)
               

               
               1-230, gnl|Hg17|chr16 (21934952-21935199)
               

               
               1-230, gnl|loxAfr1|scaffold_135867 (1113-1406)
               

               
               1-230, gnl|mm7|chr7 (116606640-116606906)
               

               
               1-230, gnl|Mm7|chr7 (116606779-116607197)
               

               
               1-230, gnl|oryCun1|scaffold_185661 (6790-7072)
               

               
               1-230, gnl|panTro1|chr18_random (10094985-10095275)
               

               
               1-230, gnl|rheMac2|chr20 (20426867-20427148)
               

               
               1-230, gnl|rn3|chr1 (179655390-179655659)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr25 (17931616-17931370)
               

               
               1-230, gnl|canFam2|chr6 (26628195-26627911)
               

               
               1-230, gnl|dasNov1|scaffold_16063 (42337-42629)
               

               
               1-230, gnl|hg17|chr16 (21934812-21935102)
               

               
               1-230, gnl|Hg17|chr16 (21934952-21935199)
               

               
               1-230, gnl|loxAfr1|scaffold_135867 (1113-1406)
               

               
               1-230, gnl|mm7|chr7 (116606640-116606906)
               

               
               1-230, gnl|Mm7|chr7 (116606779-116607197)
               

               
               1-230, gnl|oryCun1|scaffold_185661 (6790-7072)
               

               
               1-230, gnl|panTro1|chr18_random (10094985-10095275)
               

               
               1-230, gnl|rheMac2|chr20 (20426867-20427148)
               

               
               1-230, gnl|rn3|chr1 (179655390-179655659)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-230, gnl\|bosTau2\|chr25 (17931616-17931370)
	1-230, gnl\|canFam2\|chr6 (26628195-26627911)
	1-230, gnl\|dasNov1\|scaffold_16063 (42337-42629)
	1-230, gnl\|hg17\|chr16 (21934812-21935102)
	1-230, gnl\|Hg17\|chr16 (21934952-21935199)
	1-230, gnl\|loxAfr1\|scaffold_135867 (1113-1406)
	1-230, gnl\|mm7\|chr7 (116606640-116606906)
	1-230, gnl\|Mm7\|chr7 (116606779-116607197)
	1-230, gnl\|oryCun1\|scaffold_185661 (6790-7072)
	1-230, gnl\|panTro1\|chr18_random (10094985-10095275)
	1-230, gnl\|rheMac2\|chr20 (20426867-20427148)
	1-230, gnl\|rn3\|chr1 (179655390-179655659)